ENSG00000143740


Homo sapiens

Features
Gene ID: ENSG00000143740
  
Biological name :SNAP47
  
Synonyms : Q5SQN1 / SNAP47 / synaptosome associated protein 47
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: 1
Band: q42.13
Gene start: 227728539
Gene end: 227781231
  
Corresponding Affymetrix probe sets: 225244_at (Human Genome U133 Plus 2.0 Array)   230810_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000475207
Ensembl peptide - ENSP00000483253
Ensembl peptide - ENSP00000485027
Ensembl peptide - ENSP00000314157
Ensembl peptide - ENSP00000355721
Ensembl peptide - ENSP00000355722
Ensembl peptide - ENSP00000402730
Ensembl peptide - ENSP00000411128
NCBI entrez gene - 116841     See in Manteia.
RefSeq - XM_017000232
RefSeq - NM_001323930
RefSeq - NM_001323931
RefSeq - NM_001323932
RefSeq - NM_001323933
RefSeq - NM_001323934
RefSeq - NM_001323935
RefSeq - NM_053052
RefSeq - XM_006711734
RefSeq - XM_017000231
RefSeq Peptide - NP_001310862
RefSeq Peptide - NP_001310863
RefSeq Peptide - NP_001310864
RefSeq Peptide - NP_444280
RefSeq Peptide - NP_001310859
RefSeq Peptide - NP_001310860
RefSeq Peptide - NP_001310861
swissprot - U3KPT7
swissprot - A0A087X2J6
swissprot - H0Y627
swissprot - H7C3C7
swissprot - Q5SQN1
swissprot - A0A087X0B7
Ensembl - ENSG00000143740
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q0P4A7ENSDARG00000063445Danio rerio
 SNAP47ENSGALG00000005412Gallus gallus
 Q8R570ENSMUSG00000009894Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000727  Target SNARE coiled-coil homology domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016082 synaptic vesicle priming IBA
 biological_processGO:0031629 synaptic vesicle fusion to presynaptic active zone membrane IBA
 biological_processGO:0060291 long-term synaptic potentiation IEA
 biological_processGO:0098967 exocytic insertion of neurotransmitter receptor to postsynaptic membrane IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005886 plasma membrane IBA
 cellular_componentGO:0012505 endomembrane system IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030425 dendrite IEA
 cellular_componentGO:0030672 synaptic vesicle membrane IEA
 cellular_componentGO:0031083 BLOC-1 complex IDA
 cellular_componentGO:0031201 SNARE complex IBA
 cellular_componentGO:0043025 neuronal cell body IEA
 cellular_componentGO:0048471 perinuclear region of cytoplasm IEA
 molecular_functionGO:0005484 SNAP receptor activity IBA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0019905 syntaxin binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr