ENSMUSG00000009894


Mus musculus

Features
Gene ID: ENSMUSG00000009894
  
Biological name :Snap47
  
Synonyms : Mus musculus synaptosomal-associated protein, 47 (Snap47), transcript variant 1, mRNA. / Q8R570 / Snap47
  
Possible biological names infered from orthology : Q5SQN1 / synaptosome associated protein 47
  
Species: Mus musculus
  
Chr. number: 11
Strand: -1
Band: B1.3
Gene start: 59407134
Gene end: 59451186
  
Corresponding Affymetrix probe sets: 10386388 (MoGene1.0st)   1423745_at (Mouse Genome 430 2.0 Array)   1438176_x_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000119433
Ensembl peptide - ENSMUSP00000116170
Ensembl peptide - ENSMUSP00000121880
Ensembl peptide - ENSMUSP00000122508
Ensembl peptide - ENSMUSP00000010038
Ensembl peptide - ENSMUSP00000113555
Ensembl peptide - ENSMUSP00000114816
Ensembl peptide - ENSMUSP00000115762
NCBI entrez gene - 67826     See in Manteia.
MGI - MGI:1915076
RefSeq - XM_006534025
RefSeq - NM_001356452
RefSeq - NM_144521
RefSeq - XM_006534021
RefSeq - XM_006534022
RefSeq - XM_006534023
RefSeq - XM_006534024
RefSeq Peptide - NP_001343381
RefSeq Peptide - NP_653104
swissprot - B2FDF7
swissprot - I7HFU4
swissprot - I7HIK2
swissprot - I7HPB1
swissprot - J3JS29
swissprot - Q8R570
swissprot - B2FDF6
swissprot - A0A0G2JDA4
Ensembl - ENSMUSG00000009894
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q0P4A7ENSDARG00000063445Danio rerio
 SNAP47ENSGALG00000005412Gallus gallus
 Q5SQN1ENSG00000143740Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000727  Target SNARE coiled-coil homology domain
 IPR011993  PH-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0016082 synaptic vesicle priming IBA
 biological_processGO:0031629 synaptic vesicle fusion to presynaptic active zone membrane IBA
 biological_processGO:0060291 long-term synaptic potentiation IMP
 biological_processGO:0098967 exocytic insertion of neurotransmitter receptor to postsynaptic membrane IMP
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005886 plasma membrane IBA
 cellular_componentGO:0012505 endomembrane system IEA
 cellular_componentGO:0016020 membrane IDA
 cellular_componentGO:0030425 dendrite IDA
 cellular_componentGO:0030672 synaptic vesicle membrane IDA
 cellular_componentGO:0031083 BLOC-1 complex IEA
 cellular_componentGO:0031201 SNARE complex IBA
 cellular_componentGO:0043025 neuronal cell body IDA
 cellular_componentGO:0048471 perinuclear region of cytoplasm IEA
 molecular_functionGO:0005484 SNAP receptor activity IBA
 molecular_functionGO:0019905 syntaxin binding IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0003960 increased lean body mass "more than average fat-free physical bulk or volume of the body including all its components except adipose tissue" [honda:Hiraoki Onda, Mouse GEnome Informatics Curator]
Show

Allelic Composition: Ush1ctm1a(KOMP)Wtsi/Ush1ctm1a(KOMP)Wtsi
Genetic Background: C57BL/6N-Ush1ctm1a(KOMP)Wtsi/Wtsi

 MP:0003961 decreased lean body mass "less than average fat-free physical bulk or volume of the body including all its components except adipose tissue" [honda:Hiraoki Onda, Mouse GEnome Informatics Curator]
Show

Allelic Composition: Ush1ctm1a(KOMP)Wtsi/Ush1ctm1a(KOMP)Wtsi
Genetic Background: C57BL/6N-Ush1ctm1a(KOMP)Wtsi/Wtsi

 MP:0010024 increased total body fat amount "greater than the normal total amount of connective tissue composed of fat cells within the entire body" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Ush1ctm1a(KOMP)Wtsi/Ush1ctm1a(KOMP)Wtsi
Genetic Background: C57BL/6N-Ush1ctm1a(KOMP)Wtsi/Wtsi

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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