ENSG00000147894


Homo sapiens

Features
Gene ID: ENSG00000147894
  
Biological name :C9orf72
  
Synonyms : C9orf72 / chromosome 9 open reading frame 72 / Q96LT7
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 9
Strand: -1
Band: p21.2
Gene start: 27546545
Gene end: 27573866
  
Corresponding Affymetrix probe sets: 1553133_at (Human Genome U133 Plus 2.0 Array)   1553134_s_at (Human Genome U133 Plus 2.0 Array)   225919_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000494839
Ensembl peptide - ENSP00000494872
Ensembl peptide - ENSP00000369331
Ensembl peptide - ENSP00000369333
Ensembl peptide - ENSP00000369339
Ensembl peptide - ENSP00000482753
NCBI entrez gene - 203228     See in Manteia.
OMIM - 614260
RefSeq - NM_001256054
RefSeq - NM_018325
RefSeq - NM_145005
RefSeq Peptide - NP_001242983
RefSeq Peptide - NP_060795
RefSeq Peptide - NP_659442
swissprot - Q96LT7
Ensembl - ENSG00000147894
  
Related genetic diseases (OMIM): 105550 - Frontotemporal dementia and/or amyotrophic lateral sclerosis 1, 105550
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 zgc:100846ENSDARG00000011837Danio rerio
 C9orf72ENSGALG00000001864Gallus gallus
 Q6DFW0ENSMUSG00000028300Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR027819  Guanine nucleotide exchange C9orf72


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001933 negative regulation of protein phosphorylation IMP
 biological_processGO:0006897 endocytosis IMP
 biological_processGO:0006914 autophagy IMP
 biological_processGO:0010506 regulation of autophagy IMP
 biological_processGO:0016239 positive regulation of macroautophagy IGI
 biological_processGO:0034063 stress granule assembly IMP
 biological_processGO:0048675 axon extension IMP
 biological_processGO:0065009 regulation of molecular function IEA
 biological_processGO:0110053 regulation of actin filament organization IMP
 biological_processGO:1902774 late endosome to lysosome transport ISS
 biological_processGO:1903432 regulation of TORC1 signaling IMP
 biological_processGO:2000785 regulation of autophagosome assembly IMP
 cellular_componentGO:0000932 P-body IEA
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005615 extracellular space IDA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005764 lysosome IEA
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005776 autophagosome IEA
 cellular_componentGO:0010494 cytoplasmic stress granule IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030424 axon IEA
 cellular_componentGO:0030425 dendrite IEA
 cellular_componentGO:0030426 growth cone IEA
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 cellular_componentGO:0031965 nuclear membrane IEA
 cellular_componentGO:0032045 guanyl-nucleotide exchange factor complex IDA
 cellular_componentGO:0042995 cell projection IEA
 cellular_componentGO:0043204 perikaryon IEA
 cellular_componentGO:0044295 axonal growth cone IDA
 cellular_componentGO:0044304 main axon IDA
 cellular_componentGO:1990316 Atg1/ULK1 kinase complex IDA
 molecular_functionGO:0005085 guanyl-nucleotide exchange factor activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0017112 Rab guanyl-nucleotide exchange factor activity IDA
 molecular_functionGO:0017137 Rab GTPase binding IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000217 Xerostomia "Dryness of the mouth due to salivary gland dysfunction." [HPO:curators]
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 HP:0000474 Excess nuchal skin 
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 HP:0000605 Supranuclear gaze palsy 
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 HP:0000709 Psychosis "A condition characterized by changes of personality and thought patterns often accompanied by hallucinations and delusional beliefs." [HPO:curators]
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 HP:0000710 Hyperorality 
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 HP:0000711 Restlessness 
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 HP:0000712 Emotional lability 
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 HP:0000713 Agitation 
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 HP:0000716 Depression "A condition characterized by pervasive dysphoric mood, loss of interests, and inability to experience pleasure." [HPO:curators]
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 HP:0000718 Aggressive behavior "Aggressive behavior can denote verbal aggression, physical aggression against objects, physical aggression against people, and may also include aggression towards oneself." [HPO:curators]
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 HP:0000719 Inappropriate behavior 
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 HP:0000723 Restrictive behaviour, interests, and activities 
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 HP:0000726 Dementia 
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 HP:0000733 Stereotyped, repetitive behaviour 
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 HP:0000734 Disinhibition 
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 HP:0000737 Irritability 
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 HP:0000738 Hallucinations 
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 HP:0000739 Anxiety 
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 HP:0000741 Apathy 
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 HP:0000746 Delusions 
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 HP:0000751 Personality changes 
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 HP:0000757 Lack of insight 
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 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
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 HP:0001260 Dysarthria "Dysarthric speech is a general description referring to a neurological speech disorder characterized by poor articulation. Depending on the involved neurological structures, dysarthria may be further classified as spastic, flaccid, ataxic, hyperkinetic and hypokinetic, or mixed." [HPO:curators]
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 HP:0001288 Gait disturbance "The term gait disturbance can refer to any disruption of the ability to walk. In general, this can refer to neurological diseases but also fractures or other sources of pain that is triggered upon walking. However, in the current context gait disturbance refers to difficulty walking on the basis of a neurological or muscular disease." [HPO:curators]
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 HP:0001300 Parkinsonism 
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 HP:0001324 Muscle weakness "Reduced strength of muscles." [HPO:curators]
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0002017 Nausea and vomiting 
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 HP:0002059 Cerebral atrophy 
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 HP:0002069 Generalized tonic-clonic seizures "Generalized tonic-clonic seizures are `generalized seizures` (HP:0002197) in which the patient suddenly loses conciousness, the eyes roll back, and the entire body musculature undergoes tonic contractions. In the clonic phase of the seizure, there are rhythmic contractions of the musculature alternating with relaxation of all muscle groups. Loss of sphincter control during the seizure is common. This form of seizure was formerly commonly called grand mal seizure." [HPO:curators]
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 HP:0002071 Extrapyramidal signs 
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 HP:0002094 Dyspnea 
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 HP:0002145 Frontotemporal dementia 
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 HP:0002171 Gliosis 
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 HP:0002180 Neurodegeneration 
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 HP:0002186 Apraxia "A defect in the understanding of complex motor commands and in the execution of certain learned movements, i.e., deficits in the cognitive components of learned movements." [HPO:curators]
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 HP:0002273 Tetraparesis 
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 HP:0002300 Mutism 
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 HP:0002354 Memory impairment 
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 HP:0002357 Dysphasia 
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 HP:0002366 Lower motor neuron signs 
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 HP:0002371 Loss of speech 
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 HP:0002380 Fasciculations "Fasciculations are observed as small, local, involuntary muscle contractions (twitching) visible under the skin. Fasciculations result from increased irritability of an axon (which in turn is often a manifestation of disease of a motor neuron). This leads to sporadic discharges of all the muscle fibers controlled by the axon in isolation from other motor units." [HPO:curators]
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 HP:0002381 Aphasia 
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 HP:0002385 Paraparesis 
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 HP:0002427 Motor aphasia 
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 HP:0002442 Dyscalculia 
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 HP:0002446 Astrocytosis 
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 HP:0002465 Poor speech 
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 HP:0002493 Corticospinal tract dysfunction 
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 HP:0002500 Abnormality of the cerebral white matter 
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 HP:0002529 Neuropathology shows neuronal loss in basal ganglia, brainstem, and cerebellum 
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 HP:0002878 Early respiratory failure 
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 HP:0003202 Amyotrophy "The presence of muscular atrophy (which is also known as amyotrophy)." [HPO:curators]
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 HP:0003324 Generalized muscle weakness "Generalized weakness or decreased strength of the muscles." [HPO:curators]
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 HP:0003394 Muscle cramps 
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 HP:0003470 Paralysis "Paralysis of voluntary muscles means loss of contraction due to interruption of one or more motor pathways from the brain to the muscle fibers. Although the word paralysis is often used interchangeably to mean either complete or partial loss of muscle strength, it is preferable to use paralysis or plegia for complete or severe loss of muscle strength, and paresis for partial or slight loss. Motor paralysis results from deficits of the upper motor neurons (corticospinal, corticobulbar, or subcorticospinal). Motor paralysis is often accompanied by an impairment in the facility of movement." [HPO:curators]
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 HP:0003581 Onset in adulthood 
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 HP:0003678 Rapidly progressive 
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 HP:0005945 Laryngeal obstruction 
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 HP:0006892 Cerebral atrophy, frontotemporal, progressive 
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 HP:0006977 Grammar-specific speech disorder 
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 HP:0007112 Mri shows frontal and temporal cortical atrophy 
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 HP:0007308 Extrapyramidal dyskinesia 
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 HP:0007354 Amyotrophic lateral sclerosis 
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 HP:0010522 Dyslexia "A learning disorder characterized primarily by difficulties in learning to read and spell. Dyslectic children also exhibit a tendency to read words from right to left and to confuse letters such as b and d whose orientation is important for their identification. Children with dyslexia appear to be impaired in phonemic skills (the ability to associate visual symbols with the sounds they represent)." [HPO:curators]
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 HP:0010523 Alexia "An acquired type of sensory aphasia where damage to the brain leads to the loss of the ability to read." [HPO:curators]
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 HP:0010526 Dysgraphia "A writing disability in the absence of motor or sensory deficits of the upper extremities, resulting in an impairment in the ability to write regardless of the ability to read and not due to intellectual impairment." [HPO:curators]
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 HP:0010529 Echolalia "The tendency to repeat vocalizations made by another person." [HPO:curators]
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 HP:0011204 EEG with continuous slow activity "EEG showing diffuse slowing without interruption." [HPO:jalbers]
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 HP:0012378 Fatigue "A subjective feeling of tiredness characterized by a lack of energy and motivation." [HPO:probinson]
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 HP:0012444 Brain atrophy "Partial or complete wasting (loss) of brain tissue that was once present." [HPO:probinson]
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 HP:0012531 Pain "An unpleasant sensory and emotional experience associated with actual or potential tissue damage, or described in terms of such damage." [ORCID:0000-0001-5208-3432]
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 HP:0012658 Abnormal brain FDG positron emission tomography "An anomaly detectable in [18F]-fluorodeoxyglucose (FDG) positron emission tomography (PET) brain scans. Glucose uptake measured with FDG-PET is a marker of neuronal metabolic activity." [HPO:probinson]
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 HP:0012671 Abulia "Poverty of behavior and speech output, lack of initiative, loss of emotional responses, psychomotor slowing, and prolonged speech latency." [HPO:probinson, pmid:16030444, UToronto:HTrang]
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 HP:0030195 Fatigable weakness of swallowing muscles "A type of weakness of the muscles involved in swallowing that occurs after a muscle group is used and lessens if the muscle group has some rest. That is, there is diminution of strength with repetitive muscle actions." [pmid:17986328, UK:rheller]
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 HP:0030196 Fatigable weakness of respiratory muscles "A type of weakness of the muscles involved in breathing (respiration) that occurs after a muscle group is used and lessens if the muscle group has some rest. That is, there is diminution of strength with repetitive muscle actions." [UNCL:mbertoli]
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 HP:0030212 Collectionism "Excessive or pathological tendency to save and collect possessions." []
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 HP:0030213 Emotional blunting "Lack of emotional reactivity and empathy for situations or persons, sometime also for family members." [ICM:PCaroppo]
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 HP:0030222 Visual agnosia "Difficulty in recognizing objects by visual input in absence of sensorial visual impairment." [ICM:PCaroppo]
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 HP:0030223 Perseveration "Perseveration can be defined as the contextually inappropriate and unintentional repetition of a response or behavioral unit. In other words, the observed repetitiveness does not meet the demands of the situation, is not the product of deliberation, and may even unfold despite counterintention. Perseveration can therefore be differentiated from goal-directed and intentional forms of repetition, such as linguistic redundancies designed to enhance communicative or poetic impact." [HPO:probinson, pmid:9050113]
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 HP:0030391 Spoken Word Recognition Deficit "Reduced ability of lexical discrimination, which refers to the process of distinguishing a stimulus word from other phonologically similar words. Lexical discrimination can be defined as the process of correctly identifying words in the mental lexicon to match the phonological input of a stimulus." [HPO:probinson]
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 HP:0030784 Anomia "An inability to name people and objects that are correctly perceived. The individual is able to describe the object in question, but cannot provide the name." [] {comment="HPO:probinson"}
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 HP:0100256 Senile plaques "Senile plaques are extracellular deposits of amyloid in the gray matter of the brain." [HPO:sdoelken]
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 HP:0500014 Abnormal test result "Abnormal finding in a diagnostic test or assay." []
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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