ENSGALG00000001864


Gallus gallus

Features
Gene ID: ENSGALG00000001864
  
Biological name :C9orf72
  
Synonyms : C9orf72 / chromosome 9 open reading frame 72
  
Possible biological names infered from orthology : 3110043O21Rik / Guanine nucleotide exchange C9orf72 homolog / Q6DFW0 / Q96LT7
  
Species: Gallus gallus
  
Chr. number: Z
Strand: -1
Band:
Gene start: 68714996
Gene end: 68729199
  
Corresponding Affymetrix probe sets: Gga.17358.1.S1_at (Chicken Array)   GgaAffx.25317.1.S1_at (Chicken Array)   GgaAffx.25317.2.S1_at (Chicken Array)   GgaAffx.25317.2.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000002890
Ensembl peptide - ENSGALP00000048926
NCBI entrez gene - 427370     See in Manteia.
RefSeq - XM_004949595
RefSeq - XM_015280727
RefSeq - XM_424945
swissprot - E1BYM9
swissprot - A0A1D5P881
Ensembl - ENSGALG00000001864
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 zgc:100846ENSDARG00000011837Danio rerio
 Q96LT7ENSG00000147894Homo sapiens
 Q6DFW0ENSMUSG00000028300Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR027819  Guanine nucleotide exchange C9orf72


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001933 negative regulation of protein phosphorylation IEA
 biological_processGO:0006897 endocytosis IEA
 biological_processGO:0006914 autophagy IEA
 biological_processGO:0010506 regulation of autophagy IEA
 biological_processGO:0016239 positive regulation of macroautophagy IEA
 biological_processGO:0034063 stress granule assembly IEA
 biological_processGO:0048675 axon extension IEA
 biological_processGO:0065009 regulation of molecular function IEA
 biological_processGO:0110053 regulation of actin filament organization IEA
 biological_processGO:1903432 regulation of TORC1 signaling IEA
 biological_processGO:2000785 regulation of autophagosome assembly IEA
 cellular_componentGO:0000932 P-body IEA
 cellular_componentGO:0005615 extracellular space IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005764 lysosome IEA
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005776 autophagosome IEA
 cellular_componentGO:0010494 cytoplasmic stress granule IEA
 cellular_componentGO:0032045 guanyl-nucleotide exchange factor complex IEA
 cellular_componentGO:0044295 axonal growth cone IEA
 cellular_componentGO:0044304 main axon IEA
 cellular_componentGO:1990316 Atg1/ULK1 kinase complex IEA
 molecular_functionGO:0005085 guanyl-nucleotide exchange factor activity IEA
 molecular_functionGO:0017112 Rab guanyl-nucleotide exchange factor activity IEA
 molecular_functionGO:0017137 Rab GTPase binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr