ENSG00000147955


Homo sapiens

Features
Gene ID: ENSG00000147955
  
Biological name :SIGMAR1
  
Synonyms : Q99720 / sigma non-opioid intracellular receptor 1 / SIGMAR1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 9
Strand: -1
Band: p13.3
Gene start: 34634722
Gene end: 34637809
  
Corresponding Affymetrix probe sets: 201692_at (Human Genome U133 Plus 2.0 Array)   214484_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000434453
Ensembl peptide - ENSP00000277010
Ensembl peptide - ENSP00000368170
Ensembl peptide - ENSP00000420022
NCBI entrez gene - 10280     See in Manteia.
OMIM - 601978
RefSeq - NM_001282209
RefSeq - NM_001282205
RefSeq - NM_001282206
RefSeq - NM_001282207
RefSeq - NM_001282208
RefSeq - NM_005866
RefSeq - NM_147157
RefSeq Peptide - NP_671513
RefSeq Peptide - NP_001269134
RefSeq Peptide - NP_001269135
RefSeq Peptide - NP_001269136
RefSeq Peptide - NP_001269137
RefSeq Peptide - NP_001269138
RefSeq Peptide - NP_005857
swissprot - Q5T1J1
swissprot - A2A3U5
swissprot - Q99720
Ensembl - ENSG00000147955
  
Related genetic diseases (OMIM): 605726 - ?Spinal muscular atrophy, distal, autosomal recessive, 2, 605726
  614373 - ?Amyotrophic lateral sclerosis 16, juvenile, 614373
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sigmar1ENSDARG00000011418Danio rerio
 Q5ZL84ENSGALG00000028996Gallus gallus
 O55242ENSMUSG00000036078Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR006716  ERG2/sigma1 receptor-like


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006869 lipid transport IEA
 biological_processGO:0007399 nervous system development IEA
 biological_processGO:0038003 opioid receptor signaling pathway IEA
 biological_processGO:0043523 regulation of neuron apoptotic process IMP
 biological_processGO:0070207 protein homotrimerization IPI
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005635 nuclear envelope IEA
 cellular_componentGO:0005637 nuclear inner membrane IEA
 cellular_componentGO:0005640 nuclear outer membrane IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane IEA
 cellular_componentGO:0005811 lipid droplet IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005887 integral component of plasma membrane TAS
 cellular_componentGO:0014069 postsynaptic density IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane TAS
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0030426 growth cone IEA
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 cellular_componentGO:0042995 cell projection IEA
 cellular_componentGO:0045202 synapse IEA
 cellular_componentGO:0045211 postsynaptic membrane IEA
 molecular_functionGO:0004985 opioid receptor activity IEA
 molecular_functionGO:0008144 drug binding TAS


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000014 Abnormality of the bladder 
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 HP:0000763 Sensory neuropathy "Peripheral neuropathy affecting primarily the sensory nerves." [HPO:curators]
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 HP:0001171 Ectrodactyly (hands) 
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 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
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 HP:0001260 Dysarthria "Dysarthric speech is a general description referring to a neurological speech disorder characterized by poor articulation. Depending on the involved neurological structures, dysarthria may be further classified as spastic, flaccid, ataxic, hyperkinetic and hypokinetic, or mixed." [HPO:curators]
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 HP:0001265 Hyporeflexia 
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 HP:0001288 Gait disturbance "The term gait disturbance can refer to any disruption of the ability to walk. In general, this can refer to neurological diseases but also fractures or other sources of pain that is triggered upon walking. However, in the current context gait disturbance refers to difficulty walking on the basis of a neurological or muscular disease." [HPO:curators]
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001761 Pes cavus 
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 HP:0001765 Hammer toes 
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 HP:0002127 Upper motor neuron abnormality 
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 HP:0002193 Pseudobulbar behavioral symptoms "Individuals with `Pseudobulbar signs` (HP:0002200) often also demonstrate abnormal behavioral symptoms such as inappropriate emotional outbursts of uncontrolled laughter or weeping etc." [HPO:sdoelken]
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 HP:0002366 Lower motor neuron signs 
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 HP:0002460 Distal muscle weakness "Reduced strength of the distal musculature." [HPO:curators]
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 HP:0003199 Decreased muscle mass 
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 HP:0003431 Decreased motor nerve conduction velocity (NCV) 
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 HP:0003457 Abnormal EMG findings "Abnormal results of investigations using electromyography (EMG)." [HPO:curators]
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 HP:0003487 Babinski sign "Upturning of the big toe (and sometimes fanning of the other toes) in response to stimulation of the sole of the foot. If the Babinski sign is present it can indicate damage to the corticospinal tract." [HPO:curators]
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 HP:0003676 Progressive disorder 
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 HP:0003677 Slow progression 
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 HP:0003693 Distal amyotrophy "Muscular atrophy affecting muscles in the distal portions of the extremities." [HPO:curators]
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 HP:0007256 Mild pyramidal signs 
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 HP:0007269 Spinal muscular atrophy "Muscular weakness and atrophy related to loss of the motor neurons of the spinal cord and brainstem." [HPO:curators]
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 HP:0007354 Amyotrophic lateral sclerosis 
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 HP:0009027 Foot dorsiflexor weakness 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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