ENSG00000148459


Homo sapiens

Features
Gene ID: ENSG00000148459
  
Biological name :PDSS1
  
Synonyms : decaprenyl diphosphate synthase subunit 1 / PDSS1 / Q5T2R2
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 10
Strand: 1
Band: p12.1
Gene start: 26697659
Gene end: 26746798
  
Corresponding Affymetrix probe sets: 220865_s_at (Human Genome U133 Plus 2.0 Array)   236298_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000365388
Ensembl peptide - ENSP00000435695
NCBI entrez gene - 23590     See in Manteia.
OMIM - 607429
RefSeq - XM_017016011
RefSeq - NM_001321978
RefSeq - NM_001321979
RefSeq - NM_014317
RefSeq - XM_011519437
RefSeq Peptide - NP_001308908
RefSeq Peptide - NP_055132
RefSeq Peptide - NP_001308907
swissprot - Q5T2R2
swissprot - H0YEE6
Ensembl - ENSG00000148459
  
Related genetic diseases (OMIM): 614651 - Coenzyme Q10 deficiency, primary, 2, 614651
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pdss1ENSDARG00000017910Danio rerio
 PDSS1ENSGALG00000007559Gallus gallus
 Pdss1ENSMUSG00000026784Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PDSS2 / Q86YH6 / decaprenyl diphosphate synthase subunit 2ENSG0000016449420


Protein motifs (from Interpro)
Interpro ID Name
 IPR000092  Polyprenyl synthetase
 IPR008949  Isoprenoid synthase domain superfamily
 IPR033749  Polyprenyl synthetase, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006744 ubiquinone biosynthetic process TAS
 biological_processGO:0008299 isoprenoid biosynthetic process IEA
 biological_processGO:0051290 protein heterotetramerization IEA
 cellular_componentGO:0005739 mitochondrion IEA
 cellular_componentGO:0005759 mitochondrial matrix TAS
 cellular_componentGO:1990234 transferase complex IEA
 molecular_functionGO:0000010 trans-hexaprenyltranstransferase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0046982 protein heterodimerization activity IEA
 molecular_functionGO:0050347 trans-octaprenyltranstransferase activity IEA


Pathways (from Reactome)
Pathway description
Ubiquinol biosynthesis


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000256 Macrocephaly "The presence of an abnormally large `skull` (FMA:46565)." [HPO:probinson]
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 HP:0000648 Optic atrophy 
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 HP:0000965 Cutis marmorata 
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 HP:0001256 Mental retardation, mild "Mild mental retardation is defined as an intelligence quotient (IQ) in the range of 50-69." [HPO:curators]
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 HP:0001284 Areflexia 
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 HP:0001513 Obesity "A status with BODY WEIGHT that is grossly above the acceptable or desirable weight, usually due to accumulation of excess FATS in the body. The standards may vary with age, sex, genetic or cultural background. In the BODY MASS INDEX, a BMI greater than 30.0 kg/m2 is considered obese, and a BMI greater than 40.0 kg/m2 is considered morbidly obese (MORBID OBESITY)." [MeSH:D009765]
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 HP:0001653 Mitral regurgitation "An `abnormality of the mitral valve` (HP:0001633) characterized by insufficiency or incompetence of the mitral valve resulting in retrograde leaking of blood through the mitral valve upon ventricular contraction." [HPO:probinson]
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 HP:0001659 Aortic insufficiency "An insufficiency of the aortic valve, leading to regurgitation (backward flow) of blood from the aorta into the left ventricle." [HPO:curators]
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 HP:0002092 Pulmonary hypertension 
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 HP:0002151 Increased serum lactate "Abnormally increased level of blood lactate (2-hydroxypropanoic acid). Lactate is produced from pyruvate by lactate dehydrogenase during normal metabolism." [HPO:curators]
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 HP:0009830 Peripheral neuropathy "Peripheral neuropathy is a general term for any disorder of the peripheral nervous system. The main clinical features used to classify peripheral neuropathy are distribution, type (mainly demyelinating versus mainly axonal), duration, and course." [HPO:curators]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000164494 PDSS2 / Q86YH6 / decaprenyl diphosphate synthase subunit 2  / complex
 ENSG00000148459 PDSS1 / Q5T2R2 / decaprenyl diphosphate synthase subunit 1  / complex






 

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contact: otassy@igbmc.fr