ENSG00000154548


Homo sapiens

Features
Gene ID: ENSG00000154548
  
Biological name :SRSF12
  
Synonyms : Q8WXF0 / serine and arginine rich splicing factor 12 / SRSF12
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 6
Strand: -1
Band: q15
Gene start: 89095959
Gene end: 89118081
  
Corresponding Affymetrix probe sets: 1552381_at (Human Genome U133 Plus 2.0 Array)   239295_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000427982
Ensembl peptide - ENSP00000430513
Ensembl peptide - ENSP00000414302
NCBI entrez gene - 135295     See in Manteia.
RefSeq - XM_017010292
RefSeq - NM_080743
RefSeq - XM_006715348
RefSeq - XM_011535483
RefSeq Peptide - NP_542781
swissprot - Q8WXF0
swissprot - E5RJS0
swissprot - E5RFT0
Ensembl - ENSG00000154548
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q8C8K3ENSMUSG00000054679Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
O75494 / SRSF10 / serine and arginine rich splicing factor 10ENSG0000018852952
SRSF8 / Q9BRL6 / serine and arginine rich splicing factor 8ENSG0000026346535
SRSF2 / Q01130 / serine and arginine rich splicing factor 2ENSG0000016154733


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR034477  Serine/arginine-rich splicing factor 12
 IPR035979  RNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000244 spliceosomal tri-snRNP complex assembly NAS
 biological_processGO:0000381 regulation of alternative mRNA splicing, via spliceosome IDA
 biological_processGO:0000395 mRNA 5"-splice site recognition IDA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0048025 negative regulation of mRNA splicing, via spliceosome ISS
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm ISS
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding NAS
 molecular_functionGO:0050733 RS domain binding NAS
 molecular_functionGO:0051082 unfolded protein binding NAS


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr