ENSG00000159921


Homo sapiens

Features
Gene ID: ENSG00000159921
  
Biological name :GNE
  
Synonyms : glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase / GNE / Q9Y223
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 9
Strand: -1
Band: p13.3
Gene start: 36214441
Gene end: 36277056
  
Corresponding Affymetrix probe sets: 205042_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000494141
Ensembl peptide - ENSP00000367134
Ensembl peptide - ENSP00000379839
Ensembl peptide - ENSP00000414760
Ensembl peptide - ENSP00000437765
Ensembl peptide - ENSP00000439155
Ensembl peptide - ENSP00000445117
NCBI entrez gene - 10020     See in Manteia.
OMIM - 603824
RefSeq - XM_017014168
RefSeq - NM_001128227
RefSeq - NM_001190383
RefSeq - NM_001190384
RefSeq - NM_001190388
RefSeq - NM_005476
RefSeq - XM_005251334
RefSeq - XM_017014167
RefSeq Peptide - NP_001177317
RefSeq Peptide - NP_005467
RefSeq Peptide - NP_001121699
RefSeq Peptide - NP_001177312
RefSeq Peptide - NP_001177313
swissprot - Q9Y223
Ensembl - ENSG00000159921
  
Related genetic diseases (OMIM): 269921 - Sialuria, 269921
  605820 - Nonaka myopathy, 605820
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 gneENSDARG00000099771Danio rerio
 GNEENSGALG00000015331Gallus gallus
 GneENSMUSG00000028479Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000600  ROK family
 IPR003331  UDP-N-acetylglucosamine 2-epimerase domain
 IPR020004  UDP-N-acetylglucosamine 2-epimerase,UDP-hydrolysing


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006045 N-acetylglucosamine biosynthetic process IEA
 biological_processGO:0006047 UDP-N-acetylglucosamine metabolic process IEA
 biological_processGO:0006054 N-acetylneuraminate metabolic process TAS
 biological_processGO:0007155 cell adhesion TAS
 biological_processGO:0008152 metabolic process IEA
 biological_processGO:0016310 phosphorylation IEA
 biological_processGO:0046835 carbohydrate phosphorylation IEA
 cellular_componentGO:0005737 cytoplasm TAS
 cellular_componentGO:0005829 cytosol TAS
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0008761 UDP-N-acetylglucosamine 2-epimerase activity TAS
 molecular_functionGO:0009384 N-acylmannosamine kinase activity TAS
 molecular_functionGO:0016301 kinase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Sialic acid metabolism
Defective GNE causes sialuria, Nonaka myopathy and inclusion body myopathy 2


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000023 Inguinal hernia 
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000219 Thin upper lip 
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 HP:0000280 Coarse facial features 
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 HP:0000286 Epicanthus "An epicanthal fold is a semilunar fold of skin that extends from the upper eyelid across the medial canthal area to the lower eyelid." [HPO:curators]
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 HP:0000316 Hypertelorism 
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 HP:0000319 Flat philtrum 
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 HP:0000343 Long philtrum 
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000629 Periorbital fullness 
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 HP:0000664 Synophrys "Fusion of the left and right `eyebrow` (FMA:54237)." [HPO:probinson]
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 HP:0000821 Hypothyroidism 
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 HP:0000943 Dysostosis multiplex 
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 HP:0001081 Cholelithiasis 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001256 Mental retardation, mild "Mild mental retardation is defined as an intelligence quotient (IQ) in the range of 50-69." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001288 Gait disturbance "The term gait disturbance can refer to any disruption of the ability to walk. In general, this can refer to neurological diseases but also fractures or other sources of pain that is triggered upon walking. However, in the current context gait disturbance refers to difficulty walking on the basis of a neurological or muscular disease." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001382 Joint hypermobility "The ability of a joint to move beyond its normal range of motion." [HPO:curators]
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 HP:0001433 Hepatosplenomegaly 
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 HP:0001538 Protuberant abdomen "A thrusting or bulging out of the abdomen." [HPO:curators]
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 HP:0001609 Hoarse voice 
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 HP:0001638 Cardiomyopathy 
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 HP:0001744 Splenomegaly "An abnormal enlargement of the spleen." [HPO:curators]
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 HP:0001847 Increased length of the hallux "Increased length of the big toe." [HPO:curators]
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 HP:0001939 Metabolism abnormality 
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 HP:0002007 Frontal bossing "The presence of an unusually prominent forehead." [HPO:curators]
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 HP:0002162 Low posterior hairline 
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 HP:0002230 Generalized hirsutism "Abnormally increased hair growth over much of the entire body." [HPO:curators]
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 HP:0002240 Hepatomegaly "An abnormal enlargment of the liver." [HPO:curators]
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 HP:0002354 Memory impairment 
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 HP:0002460 Distal muscle weakness "Reduced strength of the distal musculature." [HPO:curators]
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 HP:0002474 Expressive language delay 
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 HP:0002487 Hyperkinesis 
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 HP:0002557 Hypoplastic nipples 
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 HP:0002574 Episodic abdominal pain 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002705 High, narrow palate "The presence of a high and narrow palate." [HPO:curators]
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 HP:0002781 Upper airway obstruction 
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 HP:0002910 Elevated transaminases "Elevations of the levels of SGOT and SGPT in the serum. SGOT (serum glutamic oxaloacetic transaminase) and SGPT (serum glutamic pyruvic transaminase) are transaminases primarily found in the liver and heart and are released into the bloodstream as the result of liver or heart damage. SGOT and SGPT are used clinically mainly as markers of liver damage." [HPO:curators]
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 HP:0003236 Elevated serum creatine phosphokinase 
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 HP:0003376 Steppage gait "An abnormal gait pattern that arises from weakness of the pretibial and peroneal muscles due to a lower motor neuron lesion. Affected patients have footdrop and are unable to dorsiflex and evert the foot. The leg is lifted high on walking so that the toes clear the ground, and there may be a slapping noise when the foot strikes the ground again." [HPO:curators]
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 HP:0003438 Absent ankle reflexes 
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 HP:0003458 EMG myopathic abnormalities "The presence of abnormal electromyographic patterns indicative of myopathy, such as small-short polyphasic motor unit potentials." [HPO:curators]
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 HP:0003547 Shoulder girdle muscle weakness "The shoulder, or pectoral, girdle is composed of the clavicles and the scapulae. Shoulder-girdle weakness refers to lack of strength of the muscles attaching to these bones, that is, lack of strength of the muscles around the shoulders." [HPO:curators]
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 HP:0003557 Increased variability in muscle fiber size "An abnormally high degree of muscle fiber size variation. This phenotypic feature can be observed upon muscle biopsy." [HPO:curators]
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 HP:0003581 Onset in adulthood 
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 HP:0003645 Prolonged partial thromboplastin time 
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 HP:0003691 Scapular winging 
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 HP:0003693 Distal amyotrophy "Muscular atrophy affecting muscles in the distal portions of the extremities." [HPO:curators]
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 HP:0003724 Shoulder girdle muscle atrophy "Amyotrophy affecting the muscles of the shoulder girdle." [HPO:curators]
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 HP:0003791 Deposits immunoreactive to beta-amyloid protein 
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 HP:0003805 Rimmed vacuoles 
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 HP:0004691 2-3 toe syndactyly "`Syndactyly` (HP:0001159) with fusion of toes two and three." [HPO:sdoelken]
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 HP:0005257 Thoracic hypoplasia 
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 HP:0006251 Limited wrist extension 
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 HP:0006467 Limited shoulder movement "A limitation of the range of movement of the shoulder joint." [HPO:curators]
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 HP:0007018 Attention deficit hyperactivity disorder "Attention deficit hyperactivity disorder (ADHD) manifests at age 2-3 years or by first grade at the latest. The main symptoms are distractibility, impulsivity, hyperactivity, and often trouble organizing tasks and projects, difficulty going to sleep, and social problems from being aggressive, loud, or impatient." [HPO:curators]
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 HP:0007210 Lower limb hypotrophy 
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 HP:0008151 Prolonged prothrombin and partial thromboplastin times 
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 HP:0008180 Mildly elevated creatine phosphokinase 
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 HP:0008443 Spinal deformities 
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 HP:0008963 Tibialis weakness and atrophy "Muscle weakness and atrophy affecting the tibialis anterior muscle." [HPO:curators]
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 HP:0009027 Foot dorsiflexor weakness 
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 HP:0009077 Weakness of long finger extensor muscles 
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 HP:0010535 Sleep apnea "An intermittent cessation of airflow at the mouth and nose during sleep. Apneas of at least 10 seconds are considered important, but persons with sleep apnea may have apneas of 20 seconds to up to 2 or 3 minutes. Patients may have up to 15 events per hour of sleep." [HPO:curators]
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 HP:0010628 Facial muscle weakness "A weakness of any or all of the muscles of the face of any etiology." [HPO:curators]
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 HP:0011220 Prominent forehead "Forward prominence of the entire forehead, due to protrusion of the frontal bone." [pmid:19125436]
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 HP:0012103 Abnormality of the mitochondrion "An anomaly of the `mitochondrion` (FMA:63835), the membranous cytoplasmic organelle the interior of which is subdivided by cristae. The `mitochondrion` (GO:0005739) is a self replicating organelle that is the site of tissue respiration." [HPO:probinson]
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 HP:0012515 Hip flexor weakness "Reduced ability to flex the femur, that is, to pull the knee upward." [ORCID:0000-0001-5208-3432]
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 HP:0012548 Skeletal muscle fatty infiltration "Deposition of fat within muscles." [HPO:probinson]
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 HP:0030007 EMG: Positive sharp waves "These are spontaneous firing action potentials stimulated by needle movement of an injured muscle fiber. There is propagation to, but not past, the needle tip. This inhibits the display of the negative deflection of the waveform." []
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 HP:0040047 Abnormality of the right hemidiaphragm 
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 HP:0100284 EMG: myotonic discharges 
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 HP:0100299 Muscle fiber inclusion bodies 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000159921 GNE / Q9Y223 / glucosamine (UDP-N-acetyl)-2-epimerase/N-acetylmannosamine kinase  / complex






 

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