ENSG00000160075


Homo sapiens

Features
Gene ID: ENSG00000160075
  
Biological name :SSU72
  
Synonyms : Q9NP77 / SSU72 / SSU72 homolog, RNA polymerase II CTD phosphatase
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: -1
Band: p36.33
Gene start: 1541673
Gene end: 1574869
  
Corresponding Affymetrix probe sets: 223051_at (Human Genome U133 Plus 2.0 Array)   223053_x_at (Human Genome U133 Plus 2.0 Array)   226229_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000351955
Ensembl peptide - ENSP00000291386
NCBI entrez gene - 29101     See in Manteia.
OMIM - 617680
RefSeq - NM_014188
RefSeq Peptide - NP_054907
swissprot - Q9NP77
Ensembl - ENSG00000160075
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ssu72ENSDARG00000031216Danio rerio
 Ssu72ENSMUSG00000029038Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SSU72P3 / SSU72 pseudogene 3ENSG0000028454671
SSU72P2 / SSU72 pseudogene 2ENSG0000028430671
SSU72P4 / SSU72 pseudogene 4ENSG0000028387371
SSU72P5 / SSU72 pseudogene 5ENSG0000028401870
SSU72P8 / SSU72 pseudogene 8ENSG0000023026870
SSU72P7 / SSU72 pseudogene 7ENSG0000028443870


Protein motifs (from Interpro)
Interpro ID Name
 IPR006811  RNA polymerase II subunit A
 IPR036196  Phosphotyrosine protein phosphatase I superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006369 termination of RNA polymerase II transcription IBA
 biological_processGO:0006378 mRNA polyadenylation IMP
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0070940 dephosphorylation of RNA polymerase II C-terminal domain IDA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0005847 mRNA cleavage and polyadenylation specificity factor complex IBA
 molecular_functionGO:0004721 phosphoprotein phosphatase activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008420 CTD phosphatase activity IDA
 molecular_functionGO:0016787 hydrolase activity IEA


Pathways (from Reactome)
Pathway description
RNA polymerase II transcribes snRNA genes


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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