ENSDARG00000031216


Danio rerio

Features
Gene ID: ENSDARG00000031216
  
Biological name :ssu72
  
Synonyms : Q6PC19 / ssu72 / SSU72 homolog, RNA polymerase II CTD phosphatase
  
Possible biological names infered from orthology : Q9CY97 / Q9NP77 / RNA polymerase II subunit A C-terminal domain phosphatase SSU72 / SSU72P2 / SSU72P3 / SSU72P4 / SSU72P5 / SSU72P7 / SSU72P8 / SSU72 pseudogene 2 / SSU72 pseudogene 3 / SSU72 pseudogene 4 / SSU72 pseudogene 5 / SSU72 pseudogene 7 / SSU72 pseudogene 8
  
Species: Danio rerio
  
Chr. number: 22
Strand: -1
Band:
Gene start: 359273
Gene end: 367569
  
Corresponding Affymetrix probe sets: Dr.7026.1.A1_at (Zebrafish Array)   Dr.7026.2.S1_at (Zebrafish Array)   NM_200728_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000041894
NCBI entrez gene - 393701     See in Manteia.
RefSeq - NM_200728
RefSeq Peptide - NP_957022
swissprot - Q6PC19
ZFIN ID - ZDB-GENE-040426-1689
Ensembl - ENSDARG00000031216
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SSU72ENSGALG00000001489Gallus gallus
 SSU72ENSG00000160075Homo sapiens
 SSU72P2ENSG00000284306Homo sapiens
 SSU72P3ENSG00000284546Homo sapiens
 SSU72P4ENSG00000283873Homo sapiens
 SSU72P5ENSG00000284018Homo sapiens
 SSU72P7ENSG00000284438Homo sapiens
 SSU72P8ENSG00000230268Homo sapiens
 Ssu72ENSMUSG00000029038Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR006811  RNA polymerase II subunit A


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006369 termination of RNA polymerase II transcription IBA
 biological_processGO:0006378 mRNA polyadenylation IBA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0070940 dephosphorylation of RNA polymerase II C-terminal domain IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005847 mRNA cleavage and polyadenylation specificity factor complex IBA
 molecular_functionGO:0004721 phosphoprotein phosphatase activity IEA
 molecular_functionGO:0008420 CTD phosphatase activity IBA
 molecular_functionGO:0016787 hydrolase activity IEA


Pathways (from Reactome)
Pathway description
RNA polymerase II transcribes snRNA genes


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr