ENSG00000160439


Homo sapiens

Features
Gene ID: ENSG00000160439
  
Biological name :RDH13
  
Synonyms : Q8NBN7 / RDH13 / retinol dehydrogenase 13
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 19
Strand: -1
Band: q13.42
Gene start: 55039108
Gene end: 55071291
  
Corresponding Affymetrix probe sets: 1559190_s_at (Human Genome U133 Plus 2.0 Array)   225449_at (Human Genome U133 Plus 2.0 Array)   225467_s_at (Human Genome U133 Plus 2.0 Array)   235249_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000468422
Ensembl peptide - ENSP00000477732
Ensembl peptide - ENSP00000291892
Ensembl peptide - ENSP00000379547
Ensembl peptide - ENSP00000391121
Ensembl peptide - ENSP00000465538
Ensembl peptide - ENSP00000466708
Ensembl peptide - ENSP00000467208
Ensembl peptide - ENSP00000467754
NCBI entrez gene - 112724     See in Manteia.
RefSeq - XM_011526408
RefSeq - NM_001145971
RefSeq - NM_138412
RefSeq - XM_005258473
RefSeq - XM_011526407
RefSeq Peptide - NP_001139443
RefSeq Peptide - NP_612421
swissprot - G8JLA1
swissprot - K7EMY5
swissprot - K7EQB5
swissprot - Q8NBN7
swissprot - K7ERV1
swissprot - A0A024R4M8
Ensembl - ENSG00000160439
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 si:ch211-107o10.3ENSDARG00000008491Danio rerio
 si:dkey-23o4.6ENSDARG00000034577Danio rerio
 zgc:153441ENSDARG00000054797Danio rerio
 Rdh13ENSMUSG00000008435Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RDH14 / Q9HBH5 / retinol dehydrogenase 14ENSG0000024085747
RDH12 / Q96NR8 / retinol dehydrogenase 12 (all-trans/9-cis/11-cis)ENSG0000013998847
RDH11 / Q8TC12 / retinol dehydrogenase 11 (all-trans/9-cis/11-cis)ENSG0000007204247
DHRS13 / Q6UX07 / dehydrogenase/reductase 13ENSG0000016753642
DHRSX / Q8N5I4 / dehydrogenase/reductase X-linkedENSG0000016908437
WWOX / Q9NZC7 / WW domain containing oxidoreductaseENSG0000018615337
A0PJE2 / DHRS12 / dehydrogenase/reductase 12ENSG0000010279627


Protein motifs (from Interpro)
Interpro ID Name
 IPR002347  Short-chain dehydrogenase/reductase SDR
 IPR020904  Short-chain dehydrogenase/reductase, conserved site
 IPR036291  NAD(P)-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0009644 response to high light intensity IEA
 biological_processGO:0010842 retina layer formation IEA
 biological_processGO:0042462 eye photoreceptor cell development IEA
 biological_processGO:0042572 retinol metabolic process IEA
 biological_processGO:0055114 oxidation-reduction process IEA
 cellular_componentGO:0005739 mitochondrion IEA
 cellular_componentGO:0005743 mitochondrial inner membrane TAS
 molecular_functionGO:0016491 oxidoreductase activity IEA
 molecular_functionGO:0052650 NADP-retinol dehydrogenase activity TAS


Pathways (from Reactome)
Pathway description
RA biosynthesis pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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