ENSG00000163501


Homo sapiens

Features
Gene ID: ENSG00000163501
  
Biological name :IHH
  
Synonyms : IHH / indian hedgehog / Q14623
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: -1
Band: q35
Gene start: 219054420
Gene end: 219060467
  
Corresponding Affymetrix probe sets: 215420_at (Human Genome U133 Plus 2.0 Array)   229358_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000295731
NCBI entrez gene - 3549     See in Manteia.
OMIM - 600726
RefSeq - NM_002181
RefSeq Peptide - NP_002172
swissprot - Q14623
Ensembl - ENSG00000163501
  
Related genetic diseases (OMIM): 112500 - Brachydactyly, type A1, 112500
  607778 - Acrocapitofemoral dysplasia, 607778
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ihhaENSDARG00000058733Danio rerio
 ihhbENSDARG00000058815Danio rerio
 IHHENSGALG00000011347Gallus gallus
 IhhENSMUSG00000006538Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
SHH / Q15465 / sonic hedgehogENSG0000016469061
DHH / O43323 / desert hedgehogENSG0000013954951


Protein motifs (from Interpro)
Interpro ID Name
 IPR000320  Hedgehog, N-terminal signalling domain
 IPR001657  Hedgehog protein
 IPR001767  Hedgehog protein, Hint domain
 IPR003586  Hint domain C-terminal
 IPR003587  Hint domain N-terminal
 IPR006141  Intein N-terminal splicing region
 IPR009045  Hedgehog signalling/DD-peptidase zinc-binding domain superfamily
 IPR036844  Hint domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001501 skeletal system development IEA
 biological_processGO:0001503 ossification IEA
 biological_processGO:0001569 branching involved in blood vessel morphogenesis IEA
 biological_processGO:0001649 osteoblast differentiation IEA
 biological_processGO:0001701 in utero embryonic development IEA
 biological_processGO:0001708 cell fate specification IEA
 biological_processGO:0001763 morphogenesis of a branching structure IEA
 biological_processGO:0001944 vasculature development IEA
 biological_processGO:0001947 heart looping IEA
 biological_processGO:0002053 positive regulation of mesenchymal cell proliferation IEA
 biological_processGO:0003382 epithelial cell morphogenesis IEA
 biological_processGO:0003406 retinal pigment epithelium development IEA
 biological_processGO:0003413 chondrocyte differentiation involved in endochondral bone morphogenesis IEA
 biological_processGO:0006029 proteoglycan metabolic process IEA
 biological_processGO:0006508 proteolysis IEA
 biological_processGO:0007224 smoothened signaling pathway IEA
 biological_processGO:0007267 cell-cell signaling IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007389 pattern specification process IEA
 biological_processGO:0008284 positive regulation of cell proliferation IEA
 biological_processGO:0009612 response to mechanical stimulus IEA
 biological_processGO:0009880 embryonic pattern specification IEA
 biological_processGO:0016539 intein-mediated protein splicing IEA
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0030704 vitelline membrane formation IEA
 biological_processGO:0031016 pancreas development IEA
 biological_processGO:0032355 response to estradiol IEA
 biological_processGO:0032967 positive regulation of collagen biosynthetic process IEA
 biological_processGO:0033085 negative regulation of T cell differentiation in thymus IEA
 biological_processGO:0033088 negative regulation of immature T cell proliferation in thymus IEA
 biological_processGO:0033089 positive regulation of T cell differentiation in thymus IEA
 biological_processGO:0035264 multicellular organism growth IEA
 biological_processGO:0035988 chondrocyte proliferation IEA
 biological_processGO:0040008 regulation of growth IEA
 biological_processGO:0042733 embryonic digit morphogenesis IEA
 biological_processGO:0043010 camera-type eye development IEA
 biological_processGO:0043066 negative regulation of apoptotic process IEA
 biological_processGO:0045453 bone resorption IEA
 biological_processGO:0045596 negative regulation of cell differentiation IEA
 biological_processGO:0045880 positive regulation of smoothened signaling pathway IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0046638 positive regulation of alpha-beta T cell differentiation IEA
 biological_processGO:0046639 negative regulation of alpha-beta T cell differentiation IEA
 biological_processGO:0048074 negative regulation of eye pigmentation IEA
 biological_processGO:0048469 cell maturation IEA
 biological_processGO:0048557 embryonic digestive tract morphogenesis IEA
 biological_processGO:0048596 embryonic camera-type eye morphogenesis IEA
 biological_processGO:0048666 neuron development IEA
 biological_processGO:0048745 smooth muscle tissue development IEA
 biological_processGO:0050679 positive regulation of epithelial cell proliferation IEA
 biological_processGO:0051216 cartilage development IEA
 biological_processGO:0060135 maternal process involved in female pregnancy IEA
 biological_processGO:0060220 camera-type eye photoreceptor cell fate commitment IEA
 biological_processGO:0060323 head morphogenesis IEA
 biological_processGO:0061053 somite development IEA
 biological_processGO:0072498 embryonic skeletal joint development IEA
 biological_processGO:0090136 epithelial cell-cell adhesion IEA
 biological_processGO:0097421 liver regeneration IEA
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005615 extracellular space IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 molecular_functionGO:0005113 patched binding IPI
 molecular_functionGO:0005509 calcium ion binding IDA
 molecular_functionGO:0008233 peptidase activity IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Class B/2 (Secretin family receptors)
Hedgehog ligand biogenesis
Release of Hh-Np from the secreting cell
Ligand-receptor interactions
Hedgehog on state
Activation of SMO
HHAT G278V abrogates palmitoylation of Hh-Np
RUNX2 regulates chondrocyte maturation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000256 Macrocephaly "The presence of an abnormally large `skull` (FMA:46565)." [HPO:probinson]
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 HP:0000767 Pectus excavatum "A defect of the chest wall characterized by a depression of the sternum, giving the chest ("pectus") a caved-in ("excavatum") appearance." [HPO:curators]
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 HP:0000768 Pectus carinatum "A deformity of the chest caused by overgrowth of the ribs and characterized by protrusion of the sternum." [HPO:curators]
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 HP:0000773 Short ribs 
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 HP:0000774 Narrow chest 
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 HP:0000887 Cupped ribs 
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 HP:0001032 Aplasia of the distal interphalangeal creases "Absence of the distal interphalangeal flexion creases of the fingers." [HPO:curators]
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 HP:0001156 Brachydactyly 
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 HP:0001169 Broad hands 
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 HP:0001204 Distal symphalangism "The term distal symphalangism refers to a bony fusion of the distal and middle phalanges of the digits of the hand, in other words the distal interphalangeal joint (DIJ) is missing which can be seen either on x-rays or as an absence of the distal interphalangeal finger creases." [HPO:curators]
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 HP:0001216 Delayed maturation/delayed ossification of carpal bones 
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 HP:0001230 Broad metacarpals 
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 HP:0001425 Heterogeneous 
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 HP:0001762 Talipes equinovarus "Also called clubfoot typically has 4 main components: inversion and adduction of the forefoot; inversion of the heel and hindfoot; equinus (limitation of extension) of the ankle and subtalar joint; and internal rotation of the leg. Clubfoot is a complex, multifactorial deformity with genetic and intrauterine factors. One popular theory postulates that a clubfoot is a result of intrauterine maldevelopment of the talus that leads to adduction and plantarflexion of the foot. On radiographic projection a clubfoot can be noted as parallel axes of talus and calcaneus." [HPO:curators]
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 HP:0001773 Short, broad feet "Abnormally short and wide feet." [HPO:curators]
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 HP:0001792 Nail hypoplasia "Underdeveloped `fingernails` (FMA:54327) or `toenails` (FMA:54328)." [HPO:probinson]
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 HP:0001821 Broad nails 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002652 Skeletal dysplasia 
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 HP:0002750 Delayed skeletal maturation "A decreased rate of skeletal maturation. Delayed skeletal maturation can be diagnosed on the basis of an estimation of the bone age from radiographs of specific bones in the human body." [HPO:curators]
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 HP:0002812 Coxa vara 
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 HP:0002866 Hypoplastic iliac wings 
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 HP:0002869 Flared iliac wings 
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 HP:0002938 Lumbar hyperlordosis 
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 HP:0002970 Genu varum 
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 HP:0002983 Micromelia 
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 HP:0002984 Hypoplasia of the radius "Underdevelopment of the radius." [HPO:curators]
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 HP:0003022 Hypoplasia of the ulna "Underdevelopment of the ulna." [HPO:curators]
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 HP:0003097 Short femur "An abnormal shortening of the thigh bones." [HPO:curators]
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 HP:0003099 Fibular overgrowth 
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 HP:0003300 Ovoid vertebral bodies 
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 HP:0003307 Hyperlordosis 
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 HP:0003498 Short stature, disproportionate 
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 HP:0004209 Clinodactyly of the 5th finger "Clinodactyly refers to a bending or curvature of the `fifth finger` (FMA:24949) in the radial direction (i.e., towards the 4th finger)." [HPO:curators]
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 HP:0004279 Hypoplastic hand 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004482 Relative macrocephaly "A relatively mild degree of macrocephaly in which the head circumference is not above two standard deviations from the mean, but appears dysproportionately large when other factors such as body stature are taken into account." [HPO:curators]
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 HP:0005194 Flattened metatarsal and metacarpal heads 
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 HP:0005736 Hypoplastic tibia 
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 HP:0005792 Humeral hypoplasia 
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 HP:0005819 Abnormally short and broad middle phalanges 
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 HP:0006059 Cone-shaped metacarpal epiphyses "A cone-shaped appearance of the epiphyses of the metacarpal bones, producing a ball-in-a-socket appearance. This epiphyses are located at the distal ends of the metacarpal bones." [HPO:curators]
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 HP:0006146 Thin metacarpals with broad epiphyses 
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 HP:0006165 Proportionate shortening of all digits 
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 HP:0006213 Thin proximal phalanges with broad epiphyses 
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 HP:0006236 Long, slender metacarpals 
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 HP:0006438 Large distal femoral epiphyses 
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 HP:0008789 Cone-shaped capital femoral epiphyses 
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 HP:0008873 Short stature, disproportionate short-limbed "A type of short stature characterized by a short limbs but an average-sized trunk." [HPO:curators]
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 HP:0009279 Radial deviation of the 4th finger "Displacement of the 4th finger towards the radial side." [HPO:curators]
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 HP:0009462 Radial deviation of the 3rd finger "Displacement of the 3rd finger towards the radial side." [HPO:curators]
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 HP:0009467 Radial deviation of the 2nd finger "Displacement of the 2nd finger towards the radial side." [HPO:curators]
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 HP:0009638 Hypoplastic/small proximal phalanx of the thumb "Hypoplastic/small proximal phalanx of the thumb. In contrast to the proximal phalanges of the digits 2-5, the proximal phalanx of the thumb is embryologically equivalent to the middle phalanges of the other digits, whereas the first metacarpal is embryologically of phalangeal origin and as such equivalent to the proximal phalanges of the other digits." [HPO:curators]
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 HP:0009778 Hypoplastic/small thumb 
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 HP:0009882 Hypoplasia of the distal phalanges of the hand 
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 HP:0010017 Cone-shaped epiphysis of the 1st metacarpal 
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 HP:0010049 Hypoplastic/short metacarpal bones 
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 HP:0010107 Hypoplastic/small proximal phalanx of the hallux 
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 HP:0010109 Hypoplastic/small hallux 
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 HP:0010241 Hypoplasia of the proximal phalanges of the hand 
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 HP:0010306 Short thorax "Reduced inferior to superior extent of the thorax." [HPO:curators]
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 HP:0010575 Dysplastic femoral head 
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 HP:0010579 Cone-shaped epiphyses 
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 HP:0100864 Hypoplasia of the femoral neck 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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