ENSG00000164934


Homo sapiens

Features
Gene ID: ENSG00000164934
  
Biological name :DCAF13
  
Synonyms : DCAF13 / DDB1 and CUL4 associated factor 13 / Q9NV06
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 8
Strand: 1
Band: q22.3
Gene start: 103414714
Gene end: 103443453
  
Corresponding Affymetrix probe sets: 1568840_at (Human Genome U133 Plus 2.0 Array)   220843_s_at (Human Genome U133 Plus 2.0 Array)   225676_s_at (Human Genome U133 Plus 2.0 Array)   231784_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000430411
Ensembl peptide - ENSP00000484962
Ensembl peptide - ENSP00000484168
Ensembl peptide - ENSP00000480810
Ensembl peptide - ENSP00000477526
Ensembl peptide - ENSP00000430883
Ensembl peptide - ENSP00000297579
NCBI entrez gene - 25879     See in Manteia.
OMIM - 616196
RefSeq - NM_015420
RefSeq Peptide - NP_056235
swissprot - A0A087WT20
swissprot - E5RHM4
swissprot - Q9NV06
swissprot - B3KME9
swissprot - A0A087X1F8
Ensembl - ENSG00000164934
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 dcaf13ENSDARG00000002267Danio rerio
 DCAF13ENSGALG00000034618Gallus gallus
 Dcaf13ENSMUSG00000022300Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR007287  Sof1-like protein
 IPR011042  Six-bladed beta-propeller, TolB-like
 IPR013979  Translation initiation factor, beta propellor-like domain
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR019775  WD40 repeat, conserved site
 IPR036322  WD40-repeat-containing domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
 biological_processGO:0006364 rRNA processing TAS
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0042254 ribosome biogenesis IEA
 biological_processGO:0043687 post-translational protein modification TAS
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005730 nucleolus IBA
 cellular_componentGO:0005813 centrosome IDA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0030054 cell junction IDA
 cellular_componentGO:0032040 small-subunit processome IBA
 cellular_componentGO:0080008 Cul4-RING E3 ubiquitin ligase complex IDA
 molecular_functionGO:0003723 RNA binding HDA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0030331 estrogen receptor binding IPI


Pathways (from Reactome)
Pathway description
rRNA modification in the nucleus and cytosol
Major pathway of rRNA processing in the nucleolus and cytosol
Neddylation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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