ENSMUSG00000022300


Mus musculus

Features
Gene ID: ENSMUSG00000022300
  
Biological name :Dcaf13
  
Synonyms : Dcaf13 / DDB1- and CUL4-associated factor 13 / Q6PAC3
  
Possible biological names infered from orthology : Q9NV06
  
Species: Mus musculus
  
Chr. number: 15
Strand: 1
Band: B3.1
Gene start: 39112865
Gene end: 39146856
  
Corresponding Affymetrix probe sets: 10423842 (MoGene1.0st)   1435442_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000022909
NCBI entrez gene - 223499     See in Manteia.
MGI - MGI:2684929
RefSeq - NM_198606
RefSeq Peptide - NP_941008
swissprot - Q6PAC3
Ensembl - ENSMUSG00000022300
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 dcaf13ENSDARG00000002267Danio rerio
 DCAF13ENSGALG00000034618Gallus gallus
 DCAF13ENSG00000164934Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR007287  Sof1-like protein
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR019775  WD40 repeat, conserved site
 IPR036322  WD40-repeat-containing domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
 biological_processGO:0006364 rRNA processing IEA
 biological_processGO:0016567 protein ubiquitination IEA
 biological_processGO:0042254 ribosome biogenesis IEA
 cellular_componentGO:0005634 nucleus ISO
 cellular_componentGO:0005730 nucleolus IBA
 cellular_componentGO:0005813 centrosome IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0032040 small-subunit processome IBA
 cellular_componentGO:0080008 Cul4-RING E3 ubiquitin ligase complex IBA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0030331 estrogen receptor binding ISO


Pathways (from Reactome)
Pathway description
Major pathway of rRNA processing in the nucleolus and cytosol
Neddylation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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