ENSG00000164951


Homo sapiens

Features
Gene ID: ENSG00000164951
  
Biological name :PDP1
  
Synonyms : PDP1 / pyruvate dehyrogenase phosphatase catalytic subunit 1 / Q9P0J1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 8
Strand: 1
Band: q22.1
Gene start: 93857807
Gene end: 93926066
  
Corresponding Affymetrix probe sets: 218273_s_at (Human Genome U133 Plus 2.0 Array)   222572_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000379503
Ensembl peptide - ENSP00000430931
Ensembl peptide - ENSP00000430655
Ensembl peptide - ENSP00000430380
Ensembl peptide - ENSP00000430366
Ensembl peptide - ENSP00000429492
Ensembl peptide - ENSP00000428433
Ensembl peptide - ENSP00000428317
Ensembl peptide - ENSP00000297598
NCBI entrez gene - 54704     See in Manteia.
OMIM - 605993
RefSeq - XM_017013588
RefSeq - NM_001161779
RefSeq - NM_001161780
RefSeq - NM_001161781
RefSeq - NM_018444
RefSeq - XM_011517135
RefSeq - XM_011517136
RefSeq - XM_017013587
RefSeq Peptide - NP_001155252
RefSeq Peptide - NP_001155251
RefSeq Peptide - NP_001155253
RefSeq Peptide - NP_060914
swissprot - E5RFL8
swissprot - A0A024R9C0
swissprot - E5RIE5
swissprot - E5RHB9
swissprot - E5RIV4
swissprot - E5RI96
swissprot - Q9P0J1
Ensembl - ENSG00000164951
  
Related genetic diseases (OMIM): 608782 - Pyruvate dehydrogenase phosphatase deficiency, 608782
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pdp1ENSDARG00000076308Danio rerio
 PDP1ENSGALG00000034876Gallus gallus
 Pdp1ENSMUSG00000049225Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PDP2 / Q9P2J9 / pyruvate dehyrogenase phosphatase catalytic subunit 2ENSG0000017284045


Protein motifs (from Interpro)
Interpro ID Name
 IPR000222  PPM-type phosphatase, divalent cation binding
 IPR001932  PPM-type phosphatase domain
 IPR015655  Protein phosphatase 2C family
 IPR036457  PPM-type phosphatase domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006470 protein dephosphorylation IEA
 biological_processGO:0010510 regulation of acetyl-CoA biosynthetic process from pyruvate TAS
 biological_processGO:0035970 peptidyl-threonine dephosphorylation IDA
 cellular_componentGO:0005739 mitochondrion IEA
 cellular_componentGO:0005759 mitochondrial matrix TAS
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0004721 phosphoprotein phosphatase activity IEA
 molecular_functionGO:0004722 protein serine/threonine phosphatase activity IDA
 molecular_functionGO:0004741 [pyruvate dehydrogenase (lipoamide)] phosphatase activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0043169 cation binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
Regulation of pyruvate dehydrogenase (PDH) complex


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0002015 Dysphagia "Difficulty in swallowing." [HPO:curators]
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 HP:0002066 Gait ataxia "Impairment of the ability to coordinate the movements required for normal walking." [HPO:curators]
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 HP:0002928 Decreased activity of the pyruvate dehydrogenase (PDH) complex 
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 HP:0003128 Lactic acidemia "An abnormal buildup of `lactic acid` (CHEBI:28358) in the body, leading to `acidification` (GO:0045851) of the blood." [HPO:probinson]
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 HP:0003593 Early onset 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000090857 PDPR / Q8NCN5 / pyruvate dehydrogenase phosphatase regulatory subunit  / complex






 

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