ENSG00000165832


Homo sapiens

Features
Gene ID: ENSG00000165832
  
Biological name :TRUB1
  
Synonyms : Q8WWH5 / TRUB1 / TruB pseudouridine synthase family member 1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 10
Strand: 1
Band: q25.3
Gene start: 114938193
Gene end: 114977676
  
Corresponding Affymetrix probe sets: 226339_at (Human Genome U133 Plus 2.0 Array)   235447_at (Human Genome U133 Plus 2.0 Array)   236020_s_at (Human Genome U133 Plus 2.0 Array)   241605_at (Human Genome U133 Plus 2.0 Array)   241606_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000298746
NCBI entrez gene - 142940     See in Manteia.
OMIM - 610726
RefSeq - NM_139169
RefSeq Peptide - NP_631908
swissprot - Q8WWH5
Ensembl - ENSG00000165832
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 trub1ENSDARG00000053805Danio rerio
 TRUB1ENSGALG00000009091Gallus gallus
 Trub1ENSMUSG00000025086Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
TRUB2 / O95900 / TruB pseudouridine synthase family member 2ENSG0000016711225


Protein motifs (from Interpro)
Interpro ID Name
 IPR002501  Pseudouridine synthase II, N-terminal
 IPR014780  tRNA pseudouridine synthase II, TruB
 IPR020103  Pseudouridine synthase, catalytic domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001522 pseudouridine synthesis IEA
 biological_processGO:0006396 RNA processing IEA
 biological_processGO:0006400 tRNA modification IBA
 biological_processGO:0008033 tRNA processing IEA
 biological_processGO:0009451 RNA modification IEA
 biological_processGO:1990481 mRNA pseudouridine synthesis IBA
 cellular_componentGO:0005739 mitochondrion IBA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0009982 pseudouridine synthase activity IBA
 molecular_functionGO:0016853 isomerase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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