ENSMUSG00000025086


Mus musculus

Features
Gene ID: ENSMUSG00000025086
  
Biological name :Trub1
  
Synonyms : Probable tRNA pseudouridine synthase 1 / Q8C0D0 / Trub1
  
Possible biological names infered from orthology : Q8WWH5 / TruB pseudouridine synthase family member 1
  
Species: Mus musculus
  
Chr. number: 19
Strand: 1
Band: D2
Gene start: 57452906
Gene end: 57491005
  
Corresponding Affymetrix probe sets: 10464240 (MoGene1.0st)   1428281_at (Mouse Genome 430 2.0 Array)   1432019_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000026072
Ensembl peptide - ENSMUSP00000026073
NCBI entrez gene - 72133     See in Manteia.
MGI - MGI:1919383
RefSeq - XM_006527357
RefSeq - NM_028115
RefSeq - NM_029839
RefSeq - XM_006527356
RefSeq Peptide - NP_082391
RefSeq Peptide - NP_084115
swissprot - Q8C0D0
Ensembl - ENSMUSG00000025086
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 trub1ENSDARG00000053805Danio rerio
 TRUB1ENSGALG00000009091Gallus gallus
 TRUB1ENSG00000165832Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Trub2 / Q91WG3 / TruB pseudouridine (psi) synthase family member 2 / O95900* / TruB pseudouridine synthase family member 2*ENSMUSG0000003982625


Protein motifs (from Interpro)
Interpro ID Name
 IPR002501  Pseudouridine synthase II, N-terminal
 IPR014780  tRNA pseudouridine synthase II, TruB
 IPR020103  Pseudouridine synthase, catalytic domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001522 pseudouridine synthesis IEA
 biological_processGO:0006396 RNA processing IEA
 biological_processGO:0006400 tRNA modification IBA
 biological_processGO:0008033 tRNA processing IEA
 biological_processGO:0009451 RNA modification IEA
 biological_processGO:1990481 mRNA pseudouridine synthesis IBA
 cellular_componentGO:0005739 mitochondrion IBA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0009982 pseudouridine synthase activity IBA
 molecular_functionGO:0016853 isomerase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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