ENSG00000166250


Homo sapiens

Features
Gene ID: ENSG00000166250
  
Biological name :CLMP
  
Synonyms : CLMP / CXADR like membrane protein / Q9H6B4
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 11
Strand: -1
Band: q24.1
Gene start: 123069865
Gene end: 123195281
  
Corresponding Affymetrix probe sets: 226834_at (Human Genome U133 Plus 2.0 Array)   228082_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000405577
NCBI entrez gene - 79827     See in Manteia.
OMIM - 611693
RefSeq - NM_024769
RefSeq - XM_011542998
RefSeq Peptide - NP_079045
swissprot - Q9H6B4
Ensembl - ENSG00000166250
  
Related genetic diseases (OMIM): 615237 - Congenital short bowel syndrome, 615237
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 BX927333.1ENSDARG00000116937Danio rerio
 CABZ01039304.1ENSDARG00000116487Danio rerio
 CLMPENSGALG00000006507Gallus gallus
 ClmpENSMUSG00000032024Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CXADR / P78310 / CXADR, Ig-like cell adhesion moleculeENSG0000015463930
IGSF11 / Q5DX21 / immunoglobulin superfamily member 11ENSG0000014484726
VSIG8 / P0DPA2 / V-set and immunoglobulin domain containing 8ENSG0000024328426
ESAM / Q96AP7 / endothelial cell adhesion moleculeENSG0000014956425
VSIG2 / Q96IQ7 / V-set and immunoglobulin domain containing 2ENSG0000001910223
GPA33 / Q99795 / glycoprotein A33ENSG0000014316721
VSIG1 / Q86XK7 / V-set and immunoglobulin domain containing 1ENSG0000010184221


Protein motifs (from Interpro)
Interpro ID Name
 IPR003598  Immunoglobulin subtype 2
 IPR003599  Immunoglobulin subtype
 IPR007110  Immunoglobulin-like domain
 IPR013106  Immunoglobulin V-set domain
 IPR013783  Immunoglobulin-like fold
 IPR021157  Cytochrome c1, transmembrane anchor, C-terminal
 IPR036179  Immunoglobulin-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0048565 digestive tract development IMP
 cellular_componentGO:0005881 cytoplasmic microtubule IDA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0005923 bicellular tight junction IEA
 cellular_componentGO:0009986 cell surface HDA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0070062 extracellular exosome HDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0001006 Hypotrichosis "Reduced or lacking hair growth." [HPO:curators]
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 HP:0001508 Failure to thrive 
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 HP:0002013 Vomiting 
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 HP:0002028 Chronic diarrhea 
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 HP:0002566 Intestinal malrotation "An abnormality of the intestinal rotation and fixation that normally occurs during the development of the gut. This can lead to volvulus, or twisting of the intestine that causes obstruction and necrosis." [HPO:curators]
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 HP:0002570 Steatorrhea 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0005245 Hypoplastic intestines 
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 HP:0030889 Congenital shortened small intestine "Substantially shortened length of the small intestine as a result of a developmental defect." [PMID:18209785]
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 HP:0030897 Decreased intestinal transit time "A reduction in the length of time required for food to pass through the intestines." []
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 HP:0030914 Abnormal peristalsis "An anomaly of the wave-like muscle contractions of the digestive tract." [HPO:probinson]
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 HP:0100543 Cognitive impairment "Abnormality in the process of thought including the ability to process information." [HPO:sdoelken]
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 HP:0100578 Lipoatrophy "Localized loss of fat tissue." [HPO:sdoelken]
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 HP:0100627 Displacement of the external urethral meatus "A displacement of the external urethral orifice from its normal position (in males normally placed at the tip of glans penis, in females normally placed about 2.5 cm behind the glans clitoridis and immediately in front of that of the vagina)." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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