ENSG00000166548


Homo sapiens

Features
Gene ID: ENSG00000166548
  
Biological name :TK2
  
Synonyms : O00142 / thymidine kinase 2, mitochondrial / TK2
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 16
Strand: -1
Band: q21
Gene start: 66508003
Gene end: 66552544
  
Corresponding Affymetrix probe sets: 204227_s_at (Human Genome U133 Plus 2.0 Array)   204276_at (Human Genome U133 Plus 2.0 Array)   204277_s_at (Human Genome U133 Plus 2.0 Array)   240300_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000464313
Ensembl peptide - ENSP00000434594
Ensembl peptide - ENSP00000433770
Ensembl peptide - ENSP00000414334
Ensembl peptide - ENSP00000407469
Ensembl peptide - ENSP00000299697
Ensembl peptide - ENSP00000463560
Ensembl peptide - ENSP00000483833
Ensembl peptide - ENSP00000435312
Ensembl peptide - ENSP00000438143
Ensembl peptide - ENSP00000440898
Ensembl peptide - ENSP00000455187
Ensembl peptide - ENSP00000457959
Ensembl peptide - ENSP00000462341
Ensembl peptide - ENSP00000462721
Ensembl peptide - ENSP00000463326
NCBI entrez gene - 7084     See in Manteia.
OMIM - 188250
RefSeq - NM_004614
RefSeq - NM_001172643
RefSeq - NM_001172644
RefSeq - NM_001172645
RefSeq - NM_001271934
RefSeq - NM_001271935
RefSeq - NM_001272050
RefSeq Peptide - NP_001166114
RefSeq Peptide - NP_004605
RefSeq Peptide - NP_001258979
RefSeq Peptide - NP_001258864
RefSeq Peptide - NP_001258863
RefSeq Peptide - NP_001166116
RefSeq Peptide - NP_001166115
swissprot - O00142
swissprot - A0A0A0MSY7
swissprot - H3BP77
swissprot - H3BV57
swissprot - J3KS73
swissprot - J3KSZ2
swissprot - J3QL12
swissprot - J3QRP0
Ensembl - ENSG00000166548
  
Related genetic diseases (OMIM): 609560 - Mitochondrial DNA depletion syndrome 2 (myopathic type), 609560
  617069 - ?Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 3, 617069
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 tk2ENSDARG00000046127Danio rerio
 TK2ENSGALG00000034216Gallus gallus
 Tk2ENSMUSG00000035824Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
DCK / P27707 / deoxycytidine kinaseENSG0000015613630
DGUOK / Q16854 / deoxyguanosine kinaseENSG0000011495628


Protein motifs (from Interpro)
Interpro ID Name
 IPR002624  Deoxynucleoside kinase
 IPR027417  P-loop containing nucleoside triphosphate hydrolase
 IPR031314  Deoxynucleoside kinase domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006139 nucleobase-containing compound metabolic process TAS
 biological_processGO:0009157 deoxyribonucleoside monophosphate biosynthetic process IEA
 biological_processGO:0009165 nucleotide biosynthetic process IEA
 biological_processGO:0016310 phosphorylation IEA
 biological_processGO:0043097 pyrimidine nucleoside salvage TAS
 biological_processGO:0046092 deoxycytidine metabolic process IEA
 biological_processGO:0046104 thymidine metabolic process IEA
 biological_processGO:0071897 DNA biosynthetic process IEA
 cellular_componentGO:0005739 mitochondrion IEA
 cellular_componentGO:0005759 mitochondrial matrix TAS
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0004137 deoxycytidine kinase activity IEA
 molecular_functionGO:0004797 thymidine kinase activity TAS
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016301 kinase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0019206 nucleoside kinase activity TAS


Pathways (from Reactome)
Pathway description
Pyrimidine salvage


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000365 Hearing loss 
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 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
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 HP:0000590 External ophthalmoplegia, progressive (PEO) 
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 HP:0000737 Irritability 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001260 Dysarthria "Dysarthric speech is a general description referring to a neurological speech disorder characterized by poor articulation. Depending on the involved neurological structures, dysarthria may be further classified as spastic, flaccid, ataxic, hyperkinetic and hypokinetic, or mixed." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001349 Facial diplegia "Facial diplegia refers to simultaneous facial palsy (bilateral facial palsy is much rarer than unilateral facial palsy)." [HPO:curators]
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 HP:0002015 Dysphagia "Difficulty in swallowing." [HPO:curators]
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 HP:0002059 Cerebral atrophy 
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 HP:0002134 Abnormality of the basal ganglia "Abnormality of the basal ganglia, which are a group of nuclei (striatum, pallidum substantia nigra, and the subthalamic nucleus) at the base of the forebrain that are connected to the cerebral cortex, the thalamus, and other areas. The basal ganglia subserve motor functions that are distinct from those of the pyramidal (corticospinal) tract, for which reason neurologic abnormalities caused by lesions to the basal ganglia are often referred to as extrapyramidal." [HPO:curators]
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 HP:0002151 Increased serum lactate "Abnormally increased level of blood lactate (2-hydroxypropanoic acid). Lactate is produced from pyruvate by lactate dehydrogenase during normal metabolism." [HPO:curators]
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 HP:0002194 Delayed gross motor development 
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 HP:0002747 Respiratory insufficiency due to muscle weakness 
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 HP:0003128 Lactic acidemia "An abnormal buildup of `lactic acid` (CHEBI:28358) in the body, leading to `acidification` (GO:0045851) of the blood." [HPO:probinson]
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 HP:0003200 Ragged-red muscle fibers "An abnormal appearance of muscle fibers observed on muscle biopsy. Ragged red fibers can be visualized with Gomori trichrome (GT) staining as irregular and intensely red subsarcolemmal zones, whereas the normal myofibrils are green. The margins of affect fibers appear red and ragged." [HPO:curators]
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 HP:0003202 Amyotrophy "The presence of muscular atrophy (which is also known as amyotrophy)." [HPO:curators]
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 HP:0003236 Elevated serum creatine phosphokinase 
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 HP:0003355 Abnormal urinary amino-acid findings 
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 HP:0003391 Gower sign "A phenomen whereby patients are not able to stand up without the use of the hands owing to weakness of the proximal muscles of the lower limbs." [HPO:probinson]
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 HP:0003458 EMG myopathic abnormalities "The presence of abnormal electromyographic patterns indicative of myopathy, such as small-short polyphasic motor unit potentials." [HPO:curators]
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 HP:0003593 Early onset 
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 HP:0003676 Progressive disorder 
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 HP:0003690 Limb muscle weakness "Weakness of the muscles of the arms and legs." [HPO:curators]
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 HP:0003691 Scapular winging 
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 HP:0003700 Generalized amyotrophy "Generalized wasting of loss of muscle tissue." [HPO:curators]
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 HP:0003701 Proximal muscle weakness "A lack of strength of the proximal muscles." [HPO:curators]
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 HP:0003737 Mitochondrial myopathy 
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 HP:0003812 Phenotypic variability 
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 HP:0003828 Variable expressivity 
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 HP:0006887 Mental retardation, progressive "Mental retardation is defined as a decreased intelligence quotient of varying degree. The term progressive mental retardation should be used if intelligence decreases/deteriorates over time." [HPO:curators]
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 HP:0008945 Loss of ability to walk in early childhood 
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 HP:0008972 Decreased activities of mitochondrial-encoded respiratory chain complexes 
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 HP:0009141 Depletion of mitochondrial DNA in muscle tissue 
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 HP:0010628 Facial muscle weakness "A weakness of any or all of the muscles of the face of any etiology." [HPO:curators]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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