ENSG00000168216


Homo sapiens

Features
Gene ID: ENSG00000168216
  
Biological name :LMBRD1
  
Synonyms : LMBR1 domain containing 1 / LMBRD1 / Q9NUN5
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 6
Strand: -1
Band: q13
Gene start: 69675802
Gene end: 69797111
  
Corresponding Affymetrix probe sets: 218191_s_at (Human Genome U133 Plus 2.0 Array)   232980_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000359609
Ensembl peptide - ENSP00000433385
Ensembl peptide - ENSP00000359602
NCBI entrez gene - 55788     See in Manteia.
OMIM - 612625
RefSeq - NM_018368
RefSeq - XM_011535941
RefSeq Peptide - NP_060838
swissprot - Q9NUN5
Ensembl - ENSG00000168216
  
Related genetic diseases (OMIM): 277380 - Methylmalonic aciduria and homocystinuria, cblF type, 277380
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 lmbrd1ENSDARG00000104223Danio rerio
 LMBRD1ENSGALG00000016174Gallus gallus
 Lmbrd1ENSMUSG00000073725Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR006876  LMBR1-like membrane protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0009235 cobalamin metabolic process TAS
 biological_processGO:0016032 viral process IEA
 biological_processGO:0038016 insulin receptor internalization IEA
 biological_processGO:0046325 negative regulation of glucose import IEA
 biological_processGO:0046627 negative regulation of insulin receptor signaling pathway IEA
 biological_processGO:0051898 negative regulation of protein kinase B signaling IEA
 cellular_componentGO:0005764 lysosome IEA
 cellular_componentGO:0005765 lysosomal membrane TAS
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0045334 clathrin-coated endocytic vesicle IEA
 molecular_functionGO:0005158 insulin receptor binding IEA
 molecular_functionGO:0031419 cobalamin binding IEA


Pathways (from Reactome)
Pathway description
Cobalamin (Cbl, vitamin B12) transport and metabolism
Defective LMBRD1 causes methylmalonic aciduria and homocystinuria type cblF


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000206 Glossitis "Inflammation of the tongue." [HPO:sdoelken]
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000219 Thin upper lip 
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 HP:0000286 Epicanthus "An epicanthal fold is a semilunar fold of skin that extends from the upper eyelid across the medial canthal area to the lower eyelid." [HPO:curators]
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000709 Psychosis "A condition characterized by changes of personality and thought patterns often accompanied by hallucinations and delusional beliefs." [HPO:curators]
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 HP:0000988 Skin rash 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001254 Lethargy 
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001508 Failure to thrive 
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 HP:0001873 Thrombocytopenia 
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 HP:0001875 Neutropenia 
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 HP:0001876 Pancytopenia 
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 HP:0001889 Megaloblastic anemia 
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 HP:0001980 Megaloblastic bone marrow 
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 HP:0002156 Homocystinuria 
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 HP:0002160 Homocystinemia 
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 HP:0002311 Incoordination 
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 HP:0002376 Developmental regression 
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 HP:0002912 Methylmalonic acidemia 
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 HP:0003145 Decreased adenosylcobalamin (ADOCBL) 
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 HP:0003153 Cystathioninuria 
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 HP:0003223 Decreased methylcobalamin (MECBL) 
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 HP:0003286 Cystathioninemia 
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 HP:0003524 Decreased methionine synthase (MTR, 156570) activity 
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 HP:0003593 Early onset 
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 HP:0008551 Underdeveloped ears 
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 HP:0008872 Feeding problems in infancy 
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 HP:0010280 Stomatitis "Stomatitis is an inflammation of the mucous membranes of any of the structures in the mouth." [HPO:curators]
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 HP:0012120 Methylmalonic aciduria "Increased concentration of `methylmalonic acid` (CHEBI:30860) in the urine." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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