ENSG00000168484


Homo sapiens

Features
Gene ID: ENSG00000168484
  
Biological name :SFTPC
  
Synonyms : P11686 / SFTPC / surfactant protein C
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 8
Strand: 1
Band: p21.3
Gene start: 22156913
Gene end: 22164479
  
Corresponding Affymetrix probe sets: 205982_x_at (Human Genome U133 Plus 2.0 Array)   211735_x_at (Human Genome U133 Plus 2.0 Array)   214387_x_at (Human Genome U133 Plus 2.0 Array)   215454_x_at (Human Genome U133 Plus 2.0 Array)   38691_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000407931
Ensembl peptide - ENSP00000316152
Ensembl peptide - ENSP00000430410
Ensembl peptide - ENSP00000430266
Ensembl peptide - ENSP00000429619
Ensembl peptide - ENSP00000429552
Ensembl peptide - ENSP00000429496
NCBI entrez gene - 6440     See in Manteia.
OMIM - 178620
RefSeq - XM_011544613
RefSeq - NM_001172357
RefSeq - NM_001172410
RefSeq - NM_001317778
RefSeq - NM_001317779
RefSeq - NM_001317780
RefSeq - NM_003018
RefSeq Peptide - NP_001304707
RefSeq Peptide - NP_001304708
RefSeq Peptide - NP_001304709
RefSeq Peptide - NP_003009
RefSeq Peptide - NP_001165828
RefSeq Peptide - NP_001165881
swissprot - A0A0S2Z4Q0
swissprot - A0A0A0MTC9
swissprot - E5RI64
swissprot - E5RHW5
swissprot - E5RG20
swissprot - C9JYF6
swissprot - P11686
swissprot - E5RI92
Ensembl - ENSG00000168484
  
Related genetic diseases (OMIM): 610913 - Surfactant metabolism dysfunction, pulmonary, 2, 610913
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SftpcENSMUSG00000022097Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001729  Pulmonary surfactant-associated protein C
 IPR007084  BRICHOS domain
 IPR015091  Surfactant protein C, N-terminal propeptide
 IPR018051  Surfactant-associated polypeptide, palmitoylation site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007585 respiratory gaseous exchange IEA
 biological_processGO:0044267 cellular protein metabolic process TAS
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005615 extracellular space IEA
 cellular_componentGO:0005789 endoplasmic reticulum membrane TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0042599 lamellar body TAS
 cellular_componentGO:0045334 clathrin-coated endocytic vesicle TAS
 cellular_componentGO:0097486 multivesicular body lumen TAS
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0042802 identical protein binding IPI


Pathways (from Reactome)
Pathway description
Surfactant metabolism
Defective pro-SFTPC causes pulmonary surfactant metabolism dysfunction 2 (SMDP2) and respiratory distress syndrome (RDS)
Defective CSF2RB causes pulmonary surfactant metabolism dysfunction 5 (SMDP5)
Defective CSF2RA causes pulmonary surfactant metabolism dysfunction 4 (SMDP4)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
Show

 HP:0000961 Cyanosis 
Show

 HP:0001217 Clubbing "Non-edematous swelling/broadening of the soft tissue of the fingertips in all dimensions." [HPO:curators]
Show

 HP:0001394 Cirrhosis 
Show

 HP:0001425 Heterogeneous 
Show

 HP:0001508 Failure to thrive 
Show

 HP:0002020 Gastroesophageal reflux 
Show

 HP:0002090 Pneumonia 
Show

 HP:0002092 Pulmonary hypertension 
Show

 HP:0002098 Respiratory distress 
Show

 HP:0002110 Bronchiectasis 
Show

 HP:0002205 Recurrent respiratory infections 
Show

 HP:0002206 Pulmonary fibrosis 
Show

 HP:0002789 Tachypnea 
Show

 HP:0002875 Exertional dyspnea 
Show

 HP:0003829 Incomplete penetrance 
Show

 HP:0005576 Tubulointerstitial fibrosis 
Show

 HP:0006515 Interstitial pneumonitis 
Show

 HP:0006517 Congenital alveolar proteinosis 
Show

 HP:0006519 Alveolar cell carcinoma 
Show

 HP:0010444 Pulmonary insufficiency "The retrograde (backwards) flow of blood through the pulmonary valve into the right ventricle during diastole." [HPO:curators]
Show

 HP:0010702 Increased immunoglobulin level "An abnormally increased level of immunoglobulin in blood." [HPO:probinson]
Show

 HP:0012735 Cough "A sudden, audible expulsion of air from the lungs through a partially closed glottis, preceded by inhalation." [HPO:probinson]
Show

 HP:0025175 Honeycomb lung "Extensive interstitial fibrosis with alveolar disruption and bronchiolectasis." []
Show

 HP:0025179 Ground-glass opacification "A descriptive term that is applied to computer tomography imaging and that refers to a hazy area of increased attenuation in the lung with preserved bronchial and vascular markings." []
Show

 HP:0025390 Reticular pattern on pulmonary HRCT "On pulmonary high-resolution computed tomography, reticular pattern is characterised by innumerable interlacing shadows suggesting a mesh." [PMID:23247773]
Show

 HP:0030830 Rales "Abnormal breath sounds characterized by discontinuous clicking or rattling." [UToronto:chum]
Show

 HP:0100759 Clubbing of fingers "Terminal broadening of the fingers (distal phalanges of the fingers)." [HPO:sdoelken]
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000168878 SFTPB / P07988 / surfactant protein B  / reaction






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr