ENSG00000169247


Homo sapiens

Features
Gene ID: ENSG00000169247
  
Biological name :SH3TC2
  
Synonyms : Q8TF17 / SH3 domain and tetratricopeptide repeats 2 / SH3TC2
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: -1
Band: q32
Gene start: 148923639
Gene end: 149063163
  
Corresponding Affymetrix probe sets: 219710_at (Human Genome U133 Plus 2.0 Array)   233561_at (Human Genome U133 Plus 2.0 Array)   240966_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000423111
Ensembl peptide - ENSP00000423660
Ensembl peptide - ENSP00000493938
Ensembl peptide - ENSP00000425627
Ensembl peptide - ENSP00000423940
Ensembl peptide - ENSP00000313025
Ensembl peptide - ENSP00000421092
Ensembl peptide - ENSP00000421420
Ensembl peptide - ENSP00000421779
Ensembl peptide - ENSP00000421860
NCBI entrez gene - 79628     See in Manteia.
OMIM - 608206
RefSeq - NM_024577
RefSeq Peptide - NP_078853
swissprot - D6RA65
swissprot - H0Y8Q9
swissprot - H0Y9E7
swissprot - E9PDF1
swissprot - Q8TF17
swissprot - D6RFX2
Ensembl - ENSG00000169247
  
Related genetic diseases (OMIM): 601596 - Charcot-Marie-Tooth disease, type 4C, 601596
  613353 - Mononeuropathy of the median nerve, mild, 613353
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 sh3tc2ENSDARG00000089917Danio rerio
 ENSGALG00000043688Gallus gallus
 ENSGALG00000044576Gallus gallus
 Q80VA5ENSMUSG00000045629Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q8TE82 / SH3TC1 / SH3 domain and tetratricopeptide repeats 1ENSG0000012508931


Protein motifs (from Interpro)
Interpro ID Name
 IPR001452  SH3 domain
 IPR011990  Tetratricopeptide-like helical domain superfamily
 IPR019734  Tetratricopeptide repeat
 IPR036028  SH3-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0022011 myelination in peripheral nervous system IEA
 biological_processGO:0032287 peripheral nervous system myelin maintenance IEA
 biological_processGO:0033157 regulation of intracellular protein transport IEA
 biological_processGO:1901184 regulation of ERBB signaling pathway IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 cellular_componentGO:0055037 recycling endosome IEA
 molecular_functionGO:0005515 protein binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000365 Hearing loss 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000764 Axonal degeneration 
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 HP:0001270 Motor retardation 
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 HP:0001271 Polyneuropathy "A generalized disorder of peripheral nerves." [HPO:curators]
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 HP:0001291 Abnormality of the cranial nerves "Abnormality affecting one or more of the cranial nerves, which emerge directly from the brain stem." [HPO:curators.]
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 HP:0001308 Tongue fasciculations 
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 HP:0001425 Heterogeneous 
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 HP:0001761 Pes cavus 
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 HP:0002355 Difficulty walking 
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 HP:0002460 Distal muscle weakness "Reduced strength of the distal musculature." [HPO:curators]
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002936 Distal sensory impairment 
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 HP:0003387 Loss of large myelinated fibers 
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 HP:0003400 Basal lamina onion bulb formations on nerve biopsy 
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 HP:0003431 Decreased motor nerve conduction velocity (NCV) 
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 HP:0003477 Axonal neuropathy 
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 HP:0003484 Upper limb involvement may occur later 
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 HP:0003693 Distal amyotrophy "Muscular atrophy affecting muscles in the distal portions of the extremities." [HPO:curators]
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 HP:0003812 Phenotypic variability 
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 HP:0004466 prolonged brainstem auditory evoked potentials 
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 HP:0007107 Segmental demyelination 
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 HP:0007695 Abnormal pupillary light reflexes "An abnormality of the reflex that controls the diameter of the pupil, in response to the intensity of light that falls on the retina of the eye." [HPO:curators]
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 HP:0009831 Mononeuropathy "A focal lesion of a single peripheral nerve. Damage to a sensory nerve is accompanied by sensory impairment of all modalities in the affected anatomic distribution." [HPO:curators]
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 HP:0010628 Facial muscle weakness "A weakness of any or all of the muscles of the face of any etiology." [HPO:curators]
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 HP:0012185 Constrictive median neuropathy "Injury to the median nerve caused by its entrapment at the wrist as it traverses through the carpal tunnel. Clinically, constrictive median neuropathy is characterized by pain, paresthesia, and weakness in the median nerve distribution of the hand." [HPO:probinson]
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 HP:0012473 Tongue atrophy "Wasting of the `tongue` (FMA:54640)." [ORCID:0000-0001-5208-3432]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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