ENSG00000170445


Homo sapiens

Features
Gene ID: ENSG00000170445
  
Biological name :HARS
  
Synonyms : HARS / histidyl-tRNA synthetase / P12081
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: -1
Band: q31.3
Gene start: 140673904
Gene end: 140691862
  
Corresponding Affymetrix probe sets: 202042_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000425634
Ensembl peptide - ENSP00000425889
Ensembl peptide - ENSP00000495358
Ensembl peptide - ENSP00000495156
Ensembl peptide - ENSP00000494297
Ensembl peptide - ENSP00000493611
Ensembl peptide - ENSP00000430063
Ensembl peptide - ENSP00000304668
Ensembl peptide - ENSP00000387893
Ensembl peptide - ENSP00000393244
Ensembl peptide - ENSP00000411085
Ensembl peptide - ENSP00000411511
Ensembl peptide - ENSP00000421576
NCBI entrez gene - 3035     See in Manteia.
OMIM - 142810
RefSeq - NM_001258042
RefSeq - NM_001289092
RefSeq - NM_001289093
RefSeq - NM_001289094
RefSeq - NM_002109
RefSeq - NM_001258040
RefSeq - NM_001258041
RefSeq Peptide - NP_001244970
RefSeq Peptide - NP_001276021
RefSeq Peptide - NP_001276022
RefSeq Peptide - NP_001276023
RefSeq Peptide - NP_002100
RefSeq Peptide - NP_001244969
RefSeq Peptide - NP_001244971
swissprot - P12081
swissprot - D6RF05
swissprot - B4E1C5
swissprot - B4DDD8
swissprot - B3KWE1
swissprot - E7ETE2
Ensembl - ENSG00000170445
  
Related genetic diseases (OMIM): 614504 - Usher syndrome type 3B, 614504
  616625 - Charcot-Marie-Tooth disease, axonal, type 2W, 616625
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 harsENSDARG00000003693Danio rerio
 ENSGALG00000029346Gallus gallus
 HARSENSGALG00000035080Gallus gallus
 HarsENSMUSG00000001380Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
HARS2 / P49590 / histidyl-tRNA synthetase 2, mitochondrialENSG0000011285572


Protein motifs (from Interpro)
Interpro ID Name
 IPR000738  WHEP-TRS domain
 IPR004154  Anticodon-binding
 IPR004516  Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit
 IPR006195  Aminoacyl-tRNA synthetase, class II
 IPR009068  S15/NS1, RNA-binding
 IPR015807  Histidine-tRNA ligase
 IPR033656  Histidyl-anticodon-binding
 IPR036621  Anticodon-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006412 translation NAS
 biological_processGO:0006418 tRNA aminoacylation for protein translation IEA
 biological_processGO:0006427 histidyl-tRNA aminoacylation IEA
 biological_processGO:0032543 mitochondrial translation IBA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005739 mitochondrion IBA
 cellular_componentGO:0005829 cytosol IDA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0004812 aminoacyl-tRNA ligase activity IEA
 molecular_functionGO:0004821 histidine-tRNA ligase activity TAS
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016874 ligase activity IEA
 molecular_functionGO:0042802 identical protein binding IPI


Pathways (from Reactome)
Pathway description
Cytosolic tRNA aminoacylation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000365 Hearing loss 
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 HP:0000375 Abnormality of cochlea "An abnormality of the cochlea, which is an inner ear structure comprised of a snail-shell like structure divided into three fluid-filled parts. Two are canals for the transmission of pressure and in the third is the organ of Corti, which detects pressure impulses and responds with electrical impulses which travel along the auditory nerve to the brain." [HPO:curators]
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 HP:0000407 Hearing loss, sensorineural "Hearing loss caused by damage or dysfunction of the auditory nerve (cranial nerve VIII)." [HPO:curators]
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 HP:0000483 Astigmatism 
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 HP:0000505 Impaired vision 
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 HP:0000512 Abnormal electroretinogram "Any abnormality of the electrical responses of various cell types in the retina as measured by electroretinography." [HPO:curators]
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 HP:0000518 Cataract "A cataract is an opacity or clouding that develops in the crystalline `lens` (FMA:58241) of the eye or in its `capsule` (FMA:58881)." [HPO:probinson]
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 HP:0000543 Pale optic disks 
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 HP:0000572 Visual loss 
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 HP:0000575 Scotoma "Scotoma refers to an area or island of loss or impairment of visual acuity surrounded by a field of normal or relatively well-preserved vision." [HPO:curators]
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 HP:0000613 Photophobia "Excessive sensitivity to light with the sensation of discomfort or pain in the eyes due to exposure to bright light." [HPO:curators]
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 HP:0000662 Night blindness 
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 HP:0000666 Nystagmus, horizontal 
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 HP:0000716 Depression "A condition characterized by pervasive dysphoric mood, loss of interests, and inability to experience pleasure." [HPO:curators]
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 HP:0000738 Hallucinations 
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 HP:0000739 Anxiety 
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001756 Vestibular hypofunction 
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 HP:0001761 Pes cavus 
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 HP:0001765 Hammer toes 
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 HP:0002078 Truncal ataxia 
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 HP:0002194 Delayed gross motor development 
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 HP:0002936 Distal sensory impairment 
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 HP:0003376 Steppage gait "An abnormal gait pattern that arises from weakness of the pretibial and peroneal muscles due to a lower motor neuron lesion. Affected patients have footdrop and are unable to dorsiflex and evert the foot. The leg is lifted high on walking so that the toes clear the ground, and there may be a slapping noise when the foot strikes the ground again." [HPO:curators]
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 HP:0003438 Absent ankle reflexes 
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 HP:0003828 Variable expressivity 
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 HP:0007730 Reduced iris pigmentation 
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 HP:0008499 High-grade hypermetropia 
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 HP:0012377 Hemianopsia "Partial or complete loss of vision in one half of the visual field of one or both eyes." [HPO:probinson]
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 HP:0100753 Schizophrenia "A mental disorder characterized by a disintegration of thought processes and of emotional responsiveness. It most commonly manifests as auditory hallucinations, paranoid or bizarre delusions, or disorganized speech and thinking, and it is accompanied by significant social or occupational dysfunction. The onset of symptoms typically occurs in young adulthood, with a global lifetime prevalence of about 0.3-0.7%." [HPO:sdoelken]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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