ENSG00000171865


Homo sapiens

Features
Gene ID: ENSG00000171865
  
Biological name :RNASEH1
  
Synonyms : O60930 / ribonuclease H1 / RNASEH1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: -1
Band: p25.3
Gene start: 3544793
Gene end: 3558616
  
Corresponding Affymetrix probe sets: 218496_at (Human Genome U133 Plus 2.0 Array)   218497_s_at (Human Genome U133 Plus 2.0 Array)   241343_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000411646
Ensembl peptide - ENSP00000313350
Ensembl peptide - ENSP00000404926
NCBI entrez gene - 246243     See in Manteia.
OMIM - 604123
RefSeq - NM_002936
RefSeq - NM_001286834
RefSeq - NM_001286837
RefSeq Peptide - NP_001273763
RefSeq Peptide - NP_002927
RefSeq Peptide - NP_001273766
swissprot - O60930
swissprot - E5KN15
swissprot - F8WBP0
swissprot - F8WD93
Ensembl - ENSG00000171865
  
Related genetic diseases (OMIM): 616479 - Progressive external ophthalmoplegia with mitochondrial DNA deletions, autosomal recessive 2, 616479
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rnaseh1ENSDARG00000042571Danio rerio
 RNASEH1ENSGALG00000016389Gallus gallus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
AC108488.2ENSG0000025576711


Protein motifs (from Interpro)
Interpro ID Name
 IPR002156  Ribonuclease H domain
 IPR009027  Ribosomal protein L9/RNase H1, N-terminal
 IPR011320  Ribonuclease H1, N-terminal
 IPR012337  Ribonuclease H-like superfamily
 IPR017067  Ribonuclease H1, eukaryote
 IPR036397  Ribonuclease H superfamily
 IPR037056  Ribonuclease H1, N-terminal domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006401 RNA catabolic process TAS
 biological_processGO:0043137 DNA replication, removal of RNA primer IBA
 biological_processGO:0090305 nucleic acid phosphodiester bond hydrolysis IEA
 biological_processGO:0090501 RNA phosphodiester bond hydrolysis IEA
 biological_processGO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic IEA
 cellular_componentGO:0005634 nucleus IBA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0000287 magnesium ion binding IEA
 molecular_functionGO:0003676 nucleic acid binding TAS
 molecular_functionGO:0003723 RNA binding TAS
 molecular_functionGO:0004518 nuclease activity IEA
 molecular_functionGO:0004519 endonuclease activity IEA
 molecular_functionGO:0004523 RNA-DNA hybrid ribonuclease activity IDA
 molecular_functionGO:0004540 ribonuclease activity TAS
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
Show

 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
Show

 HP:0000544 External ophthalmoplegia 
Show

 HP:0000590 External ophthalmoplegia, progressive (PEO) 
Show

 HP:0001260 Dysarthria "Dysarthric speech is a general description referring to a neurological speech disorder characterized by poor articulation. Depending on the involved neurological structures, dysarthria may be further classified as spastic, flaccid, ataxic, hyperkinetic and hypokinetic, or mixed." [HPO:curators]
Show

 HP:0001272 Cerebellar atrophy 
Show

 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
Show

 HP:0002015 Dysphagia "Difficulty in swallowing." [HPO:curators]
Show

 HP:0002093 Respiratory insufficiency 
Show

 HP:0002151 Increased serum lactate "Abnormally increased level of blood lactate (2-hydroxypropanoic acid). Lactate is produced from pyruvate by lactate dehydrogenase during normal metabolism." [HPO:curators]
Show

 HP:0002172 Postural instability 
Show

 HP:0002317 Unsteady gait 
Show

 HP:0003202 Amyotrophy "The presence of muscular atrophy (which is also known as amyotrophy)." [HPO:curators]
Show

 HP:0003236 Elevated serum creatine phosphokinase 
Show

 HP:0003326 Myalgia "A tendency to experience muscle pain." [HPO:curators]
Show

 HP:0003487 Babinski sign "Upturning of the big toe (and sometimes fanning of the other toes) in response to stimulation of the sole of the foot. If the Babinski sign is present it can indicate damage to the corticospinal tract." [HPO:curators]
Show

 HP:0003546 Exercise intolerance 
Show

 HP:0003676 Progressive disorder 
Show

 HP:0011712 Right bundle branch block "A conduction block of the right branch of the bundle of His. This manifests as a prolongation of the QRS complex (greater than 0.12 s) with delayed activation of the right ventricle and terminal delay on the EKG." [DDD:dbrown, HPO:probinson]
Show

 HP:0100543 Cognitive impairment "Abnormality in the process of thought including the ability to process information." [HPO:sdoelken]
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr