ENSDARG00000042571


Danio rerio

Features
Gene ID: ENSDARG00000042571
  
Biological name :rnaseh1
  
Synonyms : ribonuclease H1 / rnaseh1
  
Possible biological names infered from orthology : AC108488.2 / O60930 / ribonuclease H1 isoform 2
  
Species: Danio rerio
  
Chr. number: 20
Strand: 1
Band:
Gene start: 30378803
Gene end: 30385570
  
Corresponding Affymetrix probe sets: Dr.16522.1.A1_at (Zebrafish Array)   NM_001002659_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000062440
Ensembl peptide - ENSDARP00000117677
Ensembl peptide - ENSDARP00000140924
NCBI entrez gene - 436932     See in Manteia.
RefSeq - NM_001285828
RefSeq - NM_001002659
RefSeq Peptide - NP_001002659
RefSeq Peptide - NP_001272757
swissprot - Q5TZA7
swissprot - Q6DG94
ZFIN ID - ZDB-GENE-040718-407
Ensembl - ENSDARG00000042571
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RNASEH1ENSGALG00000016389Gallus gallus
 AC108488.2ENSG00000255767Homo sapiens
 O60930ENSG00000171865Homo sapiens
 Rnaseh1ENSMUSG00000020630Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002156  Ribonuclease H domain
 IPR009027  Ribosomal protein L9/RNase H1, N-terminal
 IPR011320  Ribonuclease H1, N-terminal
 IPR012337  Ribonuclease H-like superfamily
 IPR017067  Ribonuclease H1, eukaryote


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0043137 DNA replication, removal of RNA primer IBA
 biological_processGO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic IEA
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0000287 magnesium ion binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0004518 nuclease activity IEA
 molecular_functionGO:0004519 endonuclease activity IEA
 molecular_functionGO:0004523 RNA-DNA hybrid ribonuclease activity IBA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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