ENSG00000173218


Homo sapiens

Features
Gene ID: ENSG00000173218
  
Biological name :VANGL1
  
Synonyms : Q8TAA9 / VANGL1 / VANGL planar cell polarity protein 1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: 1
Band: p13.1
Gene start: 115641953
Gene end: 115698224
  
Corresponding Affymetrix probe sets: 219330_at (Human Genome U133 Plus 2.0 Array)   229134_at (Human Genome U133 Plus 2.0 Array)   229492_at (Human Genome U133 Plus 2.0 Array)   229997_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000358523
Ensembl peptide - ENSP00000310800
Ensembl peptide - ENSP00000347672
Ensembl peptide - ENSP00000358522
NCBI entrez gene - 81839     See in Manteia.
OMIM - 610132
RefSeq - NM_001172411
RefSeq - NM_001172412
RefSeq - NM_138959
RefSeq Peptide - NP_001165882
RefSeq Peptide - NP_001165883
RefSeq Peptide - NP_620409
swissprot - Q8TAA9
swissprot - A0A024R0E3
Ensembl - ENSG00000173218
  
Related genetic diseases (OMIM): 182940 - {Neural tube defects, susceptibility to}, 182940
  600145 - Caudal regression syndrome, 600145
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 vangl1ENSDARG00000004305Danio rerio
 VANGL1ENSGALG00000015025Gallus gallus
 Q80Z96ENSMUSG00000027860Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q9ULK5 / VANGL2 / VANGL planar cell polarity protein 2ENSG0000016273872


Protein motifs (from Interpro)
Interpro ID Name
 IPR009539  Vang-like protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0043473 pigmentation IEA
 biological_processGO:0060071 Wnt signaling pathway, planar cell polarity pathway NAS
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0016328 lateral plasma membrane IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000011 Neurogenic bladder 
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 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000062 Ambiguous genitalia 
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 HP:0000073 Ureteral duplication "A developmental anomaly characterized by the presence of two, instead of one, ureter connecting a kidney to the bladder." [HPO:curators]
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 HP:0000076 Vesicoureteral reflux "Abnormal (retrograde) movement of urine from the bladder into ureters or kidneys related to inadequacy of the valvular mechanism at the ureterovesicular junction or other causes." [HPO:curators]
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 HP:0000083 Renal failure 
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 HP:0000086 Ectopic kidney "A developmental defect in which a kidney is located in an abnormal anatomic position." [HPO:curators]
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 HP:0000104 Renal agenesis 
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 HP:0000202 Cleft lip/palate 
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 HP:0000822 Hypertension "High blood pressure." [HPO:curators]
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 HP:0000921 Missing ribs 
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 HP:0001287 Meningitis 
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 HP:0001315 Reduced reflexes 
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 HP:0001387 Joint stiffness "Joint stiffness is a perceived sensation of tightness in a joint or joints when attempting to move them after a period of inactivity. Joint stiffness typically subsides over time." [HPO:curators]
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 HP:0001762 Talipes equinovarus "Also called clubfoot typically has 4 main components: inversion and adduction of the forefoot; inversion of the heel and hindfoot; equinus (limitation of extension) of the ankle and subtalar joint; and internal rotation of the leg. Clubfoot is a complex, multifactorial deformity with genetic and intrauterine factors. One popular theory postulates that a clubfoot is a result of intrauterine maldevelopment of the talus that leads to adduction and plantarflexion of the foot. On radiographic projection a clubfoot can be noted as parallel axes of talus and calcaneus." [HPO:curators]
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 HP:0002019 Constipation 
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 HP:0002023 Anal atresia "Congenital absence of the anus, i.e., the opening at the bottom end of the intestinal tract." [HPO:curators]
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 HP:0002089 Pulmonary hypoplasia 
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 HP:0002139 Arrhinencephaly 
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 HP:0002308 Arnold-Chiari malformation "Arnold-Chiari malformation consists of a downward displacement of the cerebellar tonsils and the medulla through the foramen magnum, sometimes causing hydrocephalus as a result of obstruction of CSF outflow." [HPO:curators]
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 HP:0002315 Headache "Cephalgia, or pain in the head originating from the cerebral vault." [HPO:curators]
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 HP:0002607 Bowel incontinence 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0003199 Decreased muscle mass 
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 HP:0003418 Back pain 
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 HP:0005224 Rectal abscess 
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 HP:0005640 Abnormal vertebral segmentation and fusion 
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 HP:0007293 Anterior sacral meningocele 
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 HP:0008479 Hypoplastic vertebral bodies 
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 HP:0008517 Aplasia/Hypoplasia of the sacrum 
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 HP:0009790 Hemisacrum (S2-S5) "A hemisacral defect involving the sacral vertebrae S2 to S5." [HPO:curators]
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 HP:0009800 maternal diabetes "Maternal diabetes can either be a gestational, mostly type 2 diabetes, or a type 1 diabetes. Essential is the resulting maternal hyperglycemia as a non-specific teratogen, imposing the same risk of congenital malformations to pregnant women with both type 1 and type2 diabetes." [HPO:curators]
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 HP:0011867 Abnormality of the wing of the ilium "An anomaly of the `ilium ala` (FMA:42826). This is the large expanded portion of the ilum which bounds the greater pelvis laterally." [HPO:probinson]
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 HP:0012033 Sacral lipoma "Presence of a lipoma in the region of the sacrum." [HPO:probinson]
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 HP:0025247 Dermoid cyst "A congenital subcutaneous cyst that arises from entrapment of skin along the lines of embryonic fusion. In contrast to epidermal cysts, dermoid cysts tend to contain various adnexal structures such as hair, sebaceous, eccrine or apocrine glands. Dermoid cysts are present at birth, and are indolent, firm, deep, subcutaneous nodules. They are often located on the head and neck, and rarely in the anogenital area. Dermoid cysts are slowly progressive and can grow to a size of 1 to 4 cm." []
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 HP:0030680 Abnormality of cardiovascular system morphology "Any structural anomaly of the heart and great vessels." []
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 HP:0100710 Impulsivity 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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