ENSDARG00000004305


Danio rerio

Features
Gene ID: ENSDARG00000004305
  
Biological name :vangl1
  
Synonyms : vangl1 / VANGL planar cell polarity protein 1
  
Possible biological names infered from orthology : Q80Z96 / Q8TAA9 / VANGL planar cell polarity 1
  
Species: Danio rerio
  
Chr. number: 9
Strand: 1
Band:
Gene start: 33009284
Gene end: 33055440
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000028523
NCBI entrez gene - 403076     See in Manteia.
RefSeq - NM_205750
RefSeq Peptide - NP_991313
swissprot - B0V210
ZFIN ID - ZDB-GENE-040621-2
Ensembl - ENSDARG00000004305
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 VANGL1ENSGALG00000015025Gallus gallus
 Q8TAA9ENSG00000173218Homo sapiens
 Q80Z96ENSMUSG00000027860Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
vangl2 / Q8UVJ6 / VANGL planar cell polarity protein 2 / Q9ULK5* / Q91ZD4* / VANGL planar cell polarity 2*ENSDARG0000002739761


Protein motifs (from Interpro)
Interpro ID Name
 IPR009539  Vang-like protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007275 multicellular organism development IEA
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000001 Kupffer s vesicle Kupffers vesicle ciliated cell oriented towards Kupffers vesicle anterior region, abnormal
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 ZFA:0000022 floor plate floor plate ciliated cell oriented towards floor plate anterior region, abnormal
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 ZFA:0000155 somite somite increased width , abnormal
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 ZFA:0001058 caudal fin caudal fin increased curvature , abnormal
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 ZFA:0001094 whole organism whole organism medial-lateral axis increased length , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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