ENSG00000174173


Homo sapiens

Features
Gene ID: ENSG00000174173
  
Biological name :TRMT10C
  
Synonyms : Q7L0Y3 / TRMT10C / tRNA methyltransferase 10C, mitochondrial RNase P subunit
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 3
Strand: 1
Band: q12.3
Gene start: 101561862
Gene end: 101566446
  
Corresponding Affymetrix probe sets: 223267_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000312356
Ensembl peptide - ENSP00000419389
NCBI entrez gene - 54931     See in Manteia.
OMIM - 615423
RefSeq - NM_017819
RefSeq Peptide - NP_060289
swissprot - C9JVB6
swissprot - Q7L0Y3
Ensembl - ENSG00000174173
  
Related genetic diseases (OMIM): 616974 - Combined oxidative phosphorylation deficiency 30, 616974
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 trmt10cENSDARG00000041575Danio rerio
 TRMT10CENSGALG00000015328Gallus gallus
 Q3UFY8ENSMUSG00000044763Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q6PF06 / TRMT10B / tRNA methyltransferase 10BENSG0000016527518
Q8TBZ6 / TRMT10A / tRNA methyltransferase 10AENSG0000014533114


Protein motifs (from Interpro)
Interpro ID Name
 IPR007356  tRNA (guanine-N1-)-methyltransferase, eukaryotic
 IPR016009  tRNA methyltransferase TRMD/TRM10-type domain
 IPR025812  tRNA methyltransferase 10 homologue C
 IPR028564  tRNA methyltransferase TRM10-type domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000964 mitochondrial RNA 5"-end processing IMP
 biological_processGO:0008033 tRNA processing IEA
 biological_processGO:0032259 methylation IEA
 biological_processGO:0070131 positive regulation of mitochondrial translation IMP
 biological_processGO:0070901 mitochondrial tRNA methylation TAS
 biological_processGO:0080009 mRNA methylation IDA
 biological_processGO:0090646 mitochondrial tRNA processing IMP
 biological_processGO:0097745 mitochondrial tRNA 5"-end processing IDA
 biological_processGO:1990180 mitochondrial tRNA 3"-end processing IDA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005739 mitochondrion IDA
 cellular_componentGO:0005759 mitochondrial matrix TAS
 cellular_componentGO:0030678 mitochondrial ribonuclease P complex TAS
 cellular_componentGO:0042645 mitochondrial nucleoid IEA
 molecular_functionGO:0000049 tRNA binding IDA
 molecular_functionGO:0003723 RNA binding HDA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008168 methyltransferase activity IEA
 molecular_functionGO:0009019 tRNA (guanine-N1-)-methyltransferase activity EXP
 molecular_functionGO:0016429 tRNA (adenine-N1-)-methyltransferase activity IDA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0052905 tRNA (guanine(9)-N(1))-methyltransferase activity IEA
 molecular_functionGO:0061953 mRNA (adenine-N1-)-methyltransferase activity IDA


Pathways (from Reactome)
Pathway description
tRNA processing in the mitochondrion
tRNA modification in the mitochondrion
rRNA processing in the mitochondrion


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001410 Decreased liver function 
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 HP:0001508 Failure to thrive 
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 HP:0001712 Left ventricular hypertrophy 
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 HP:0002020 Gastroesophageal reflux 
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 HP:0002151 Increased serum lactate "Abnormally increased level of blood lactate (2-hydroxypropanoic acid). Lactate is produced from pyruvate by lactate dehydrogenase during normal metabolism." [HPO:curators]
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 HP:0002490 Increased CSF lactate "Increased concentration of lactate in the cerebrospinal fluid." [HPO:curators]
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 HP:0002910 Elevated transaminases "Elevations of the levels of SGOT and SGPT in the serum. SGOT (serum glutamic oxaloacetic transaminase) and SGPT (serum glutamic pyruvic transaminase) are transaminases primarily found in the liver and heart and are released into the bloodstream as the result of liver or heart damage. SGOT and SGPT are used clinically mainly as markers of liver damage." [HPO:curators]
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 HP:0003128 Lactic acidemia "An abnormal buildup of `lactic acid` (CHEBI:28358) in the body, leading to `acidification` (GO:0045851) of the blood." [HPO:probinson]
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 HP:0003348 Hyperalaninemia 
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 HP:0003577 Onset at birth 
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 HP:0011968 Feeding difficulties "Impaired ability to eat related to problems gathering food and getting ready to suck, chew, or swallow it." [ISCA:eriggs]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000072506 Q99714 / HSD17B10 / hydroxysteroid 17-beta dehydrogenase 10  / complex
 ENSG00000100890 O15091 / KIAA0391  / complex






 

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