ENSG00000145331


Homo sapiens

Features
Gene ID: ENSG00000145331
  
Biological name :TRMT10A
  
Synonyms : Q8TBZ6 / TRMT10A / tRNA methyltransferase 10A
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 4
Strand: -1
Band: q23
Gene start: 99546709
Gene end: 99564032
  
Corresponding Affymetrix probe sets: 230243_at (Human Genome U133 Plus 2.0 Array)   231877_at (Human Genome U133 Plus 2.0 Array)   242442_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000273962
Ensembl peptide - ENSP00000378343
Ensembl peptide - ENSP00000397551
Ensembl peptide - ENSP00000423628
Ensembl peptide - ENSP00000378342
NCBI entrez gene - 93587     See in Manteia.
OMIM - 616013
RefSeq - XM_006714417
RefSeq - NM_001134665
RefSeq - NM_001134666
RefSeq - NM_152292
RefSeq - XM_005263352
RefSeq Peptide - NP_689505
RefSeq Peptide - NP_001128138
RefSeq Peptide - NP_001128137
swissprot - D6R954
swissprot - V9HVY8
swissprot - Q8TBZ6
swissprot - X6REK4
Ensembl - ENSG00000145331
  
Related genetic diseases (OMIM): 616033 - Microcephaly, short stature, and impaired glucose metabolism 1, 616033
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 trmt10aENSDARG00000036678Danio rerio
 TRMT10AENSGALG00000012264Gallus gallus
 Trmt10aENSMUSG00000004127Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q6PF06 / TRMT10B / tRNA methyltransferase 10BENSG0000016527524
Q7L0Y3 / TRMT10C / tRNA methyltransferase 10C, mitochondrial RNase P subunitENSG0000017417317


Protein motifs (from Interpro)
Interpro ID Name
 IPR007356  tRNA (guanine-N1-)-methyltransferase, eukaryotic
 IPR011989  Armadillo-like helical
 IPR016009  tRNA methyltransferase TRMD/TRM10-type domain
 IPR016653  tRNA (guanine(9)-N(1))-methyltransferase TRM10/TRM10A
 IPR028564  tRNA methyltransferase TRM10-type domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0030488 tRNA methylation IDA
 biological_processGO:0032259 methylation IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005730 nucleolus IDA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0015629 actin cytoskeleton IDA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0000049 tRNA binding IDA
 molecular_functionGO:0003723 RNA binding HDA
 molecular_functionGO:0008168 methyltransferase activity IEA
 molecular_functionGO:0009019 tRNA (guanine-N1-)-methyltransferase activity IDA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0052905 tRNA (guanine(9)-N(1))-methyltransferase activity IEA


Pathways (from Reactome)
Pathway description
tRNA modification in the nucleus and cytosol


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000445 Broad nose 
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 HP:0000470 Short neck 
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 HP:0000786 Primary amenorrhea 
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 HP:0000825 Hyperinsulinemic hypoglycemia 
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 HP:0000939 Osteoporosis "Osteoporosis is a systemic skeletal disease characterized by low bone density and microarchitectural deterioration of bone tissue with a consequent increase in bone fragility. According to the WHO, osteoporosis is characterized by a value of BMD 2.5 standard deviations or more below the young adult mean." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001270 Motor retardation 
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 HP:0001388 Joint laxity 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0025383 Dorsocervical fat pad "An area of fat accumulation at the backof the next in the form of a hump." [PMID:22301856]
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 HP:0025515 Delayed thelarche "Later than normal development of the breasts." []
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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