ENSG00000178445


Homo sapiens

Features
Gene ID: ENSG00000178445
  
Biological name :GLDC
  
Synonyms : GLDC / glycine decarboxylase / P23378
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 9
Strand: -1
Band: p24.1
Gene start: 6532464
Gene end: 6645783
  
Corresponding Affymetrix probe sets: 204836_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000491101
Ensembl peptide - ENSP00000370737
Ensembl peptide - ENSP00000491932
Ensembl peptide - ENSP00000491895
Ensembl peptide - ENSP00000491487
Ensembl peptide - ENSP00000491392
Ensembl peptide - ENSP00000491369
Ensembl peptide - ENSP00000491312
Ensembl peptide - ENSP00000491209
Ensembl peptide - ENSP00000491161
NCBI entrez gene - 2731     See in Manteia.
OMIM - 238300
RefSeq - NM_000170
RefSeq Peptide - NP_000161
swissprot - A0A1W2PPK8
swissprot - A0A1W2PPH6
swissprot - A0A1W2PPG0
swissprot - A0A1W2PPE1
swissprot - A0A1W2PPD7
swissprot - A0A1W2PPB1
swissprot - A0A1W2PP74
swissprot - A0A1W2PQV3
swissprot - P23378
swissprot - A0A1W2PQU6
Ensembl - ENSG00000178445
  
Related genetic diseases (OMIM): 605899 - Glycine encephalopathy, 605899
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 gldcENSDARG00000035120Danio rerio
 GLDCENSGALG00000015053Gallus gallus
 GldcENSMUSG00000024827Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001597  Aromatic amino acid beta-eliminating lyase/threonine aldolase
 IPR003437  Glycine dehydrogenase (decarboxylating)
 IPR015421  Pyridoxal phosphate-dependent transferase, major domain
 IPR015422  Pyridoxal phosphate-dependent transferase domain 1
 IPR015424  Pyridoxal phosphate-dependent transferase
 IPR020581  Glycine cleavage system P protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006520 cellular amino acid metabolic process IEA
 biological_processGO:0006544 glycine metabolic process IEA
 biological_processGO:0006546 glycine catabolic process IEA
 biological_processGO:0019464 glycine decarboxylation via glycine cleavage system IEA
 biological_processGO:0022900 electron transport chain IEA
 biological_processGO:0036255 response to methylamine ISS
 biological_processGO:0055114 oxidation-reduction process IEA
 biological_processGO:1903442 response to lipoic acid ISS
 biological_processGO:1990830 cellular response to leukemia inhibitory factor IEA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005739 mitochondrion IEA
 cellular_componentGO:0005759 mitochondrial matrix TAS
 cellular_componentGO:0005886 plasma membrane IDA
 cellular_componentGO:0005960 glycine cleavage complex IEA
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0004375 glycine dehydrogenase (decarboxylating) activity IEA
 molecular_functionGO:0009055 electron transfer activity TAS
 molecular_functionGO:0016491 oxidoreductase activity IEA
 molecular_functionGO:0016594 glycine binding IEA
 molecular_functionGO:0016829 lyase activity IEA
 molecular_functionGO:0019899 enzyme binding IEA
 molecular_functionGO:0030170 pyridoxal phosphate binding IEA
 molecular_functionGO:0042803 protein homodimerization activity ISS
 molecular_functionGO:0046983 protein dimerization activity IEA
 molecular_functionGO:0070280 pyridoxal binding ISS


Pathways (from Reactome)
Pathway description
Glycine degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000711 Restlessness 
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 HP:0000718 Aggressive behavior "Aggressive behavior can denote verbal aggression, physical aggression against objects, physical aggression against people, and may also include aggression towards oneself." [HPO:curators]
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 HP:0000737 Irritability 
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 HP:0000752 Hyperactivity 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001254 Lethargy 
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 HP:0001274 Agenesis of corpus callosum "Absence of the corpus callosum as a result of the failure of the corpus callosum to develop, which can be the result of a failure in any one of the multiple steps of callosal development including cellular proliferation and migration, axonal growth or glial patterning at the midline." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001298 Encephalopathy 
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 HP:0001336 Myoclonus "Very brief, involuntary random muscular contractions occurring at rest, in response to sensory stimuli, or accompanying voluntary movements." [HPO:curators]
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001522 Death in infancy 
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 HP:0002154 Hyperglycinemia 
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 HP:0003108 Hyperglycinuria 
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 HP:0100247 Recurrent singultus "A contraction of the diaphragm that repeats several times per minute. In humans, the abrupt rush of air into the lungs causes the epiglottis to close, creating a hic sound. Also known as synchronous diaphragmatic flutter (SDF), or singultus, from the Latin singult, the act of catching one s breath while sobbing. The hiccup is an involuntary action involving a reflex arc." [HPO:sdoelken]
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 HP:0100710 Impulsivity 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000140905 GCSH / P23434 / glycine cleavage system protein H  / reaction
 ENSG00000178445 GLDC / P23378 / glycine decarboxylase  / complex






 

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