ENSG00000140905


Homo sapiens

Features
Gene ID: ENSG00000140905
  
Biological name :GCSH
  
Synonyms : GCSH / glycine cleavage system protein H / P23434
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 16
Strand: -1
Band: q23.2
Gene start: 81081938
Gene end: 81096425
  
Corresponding Affymetrix probe sets: 213129_s_at (Human Genome U133 Plus 2.0 Array)   213133_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000457630
Ensembl peptide - ENSP00000457645
Ensembl peptide - ENSP00000492187
Ensembl peptide - ENSP00000492163
Ensembl peptide - ENSP00000491127
Ensembl peptide - ENSP00000319531
Ensembl peptide - ENSP00000455019
Ensembl peptide - ENSP00000455287
Ensembl peptide - ENSP00000455579
NCBI entrez gene - 2653     See in Manteia.
OMIM - 238330
RefSeq - NM_004483
RefSeq - XM_017023136
RefSeq - XM_017023137
RefSeq Peptide - NP_004474
swissprot - H3BPF0
swissprot - H3BQ30
swissprot - A0A1W2PQX3
swissprot - H3BUH9
swissprot - P23434
swissprot - H3BUG8
swissprot - A0A1W2PQV2
swissprot - A0A1W2PNX3
swissprot - H3BNV1
Ensembl - ENSG00000140905
  
Related genetic diseases (OMIM): 605899 - ?Glycine encephalopathy, 605899
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 gcshaENSDARG00000091655Danio rerio
 gcshbENSDARG00000105187Danio rerio
 GCSHENSGALG00000032679Gallus gallus
 GcshENSMUSG00000034424Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
AC092718.8ENSG0000028451284
AC092718.3ENSG0000026064383


Protein motifs (from Interpro)
Interpro ID Name
 IPR000089  Biotin/lipoyl attachment
 IPR002930  Glycine cleavage system H-protein
 IPR003016  2-oxo acid dehydrogenase, lipoyl-binding site
 IPR011053  Single hybrid motif
 IPR017453  Glycine cleavage system H-protein, subgroup
 IPR033753  Glycine cleavage system H-protein/Simiate


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006546 glycine catabolic process TAS
 biological_processGO:0009249 protein lipoylation IDA
 biological_processGO:0019464 glycine decarboxylation via glycine cleavage system IEA
 biological_processGO:0032259 methylation IEA
 biological_processGO:0034641 cellular nitrogen compound metabolic process TAS
 cellular_componentGO:0005739 mitochondrion IEA
 cellular_componentGO:0005759 mitochondrial matrix TAS
 cellular_componentGO:0005960 glycine cleavage complex IEA
 molecular_functionGO:0004047 aminomethyltransferase activity TAS
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
Glyoxylate metabolism and glycine degradation
Glycine degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000711 Restlessness 
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 HP:0000718 Aggressive behavior "Aggressive behavior can denote verbal aggression, physical aggression against objects, physical aggression against people, and may also include aggression towards oneself." [HPO:curators]
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 HP:0000737 Irritability 
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 HP:0000752 Hyperactivity 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001254 Lethargy 
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 HP:0001274 Agenesis of corpus callosum "Absence of the corpus callosum as a result of the failure of the corpus callosum to develop, which can be the result of a failure in any one of the multiple steps of callosal development including cellular proliferation and migration, axonal growth or glial patterning at the midline." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001298 Encephalopathy 
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 HP:0001336 Myoclonus "Very brief, involuntary random muscular contractions occurring at rest, in response to sensory stimuli, or accompanying voluntary movements." [HPO:curators]
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001522 Death in infancy 
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 HP:0002154 Hyperglycinemia 
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 HP:0003108 Hyperglycinuria 
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 HP:0100247 Recurrent singultus "A contraction of the diaphragm that repeats several times per minute. In humans, the abrupt rush of air into the lungs causes the epiglottis to close, creating a hic sound. Also known as synchronous diaphragmatic flutter (SDF), or singultus, from the Latin singult, the act of catching one s breath while sobbing. The hiccup is an involuntary action involving a reflex arc." [HPO:sdoelken]
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 HP:0100710 Impulsivity 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000004779 O14561 / NDUFAB1 / NADH:ubiquinone oxidoreductase subunit AB1  / reaction
 ENSG00000091140 DLD / P09622 / dihydrolipoamide dehydrogenase  / reaction
 ENSG00000105953 OGDH / Q02218 / oxoglutarate dehydrogenase  / reaction
 ENSG00000110435 PDHX / O00330 / pyruvate dehydrogenase complex component X  / reaction
 ENSG00000119689 DLST / P36957 / dihydrolipoamide S-succinyltransferase  / reaction
 ENSG00000181192 DHTKD1 / Q96HY7 / dehydrogenase E1 and transketolase domain containing 1  / reaction
 ENSG00000121897 LIAS / O43766 / lipoic acid synthetase  / reaction
 ENSG00000168291 PDHB / P11177 / pyruvate dehydrogenase E1 beta subunit  / reaction
 ENSG00000248098 BCKDHA / P12694 / branched chain keto acid dehydrogenase E1, alpha polypeptide  / reaction
 ENSG00000145020 AMT / P48728 / aminomethyltransferase  / reaction
 ENSG00000150768 DLAT / P10515 / dihydrolipoamide S-acetyltransferase  / reaction
 ENSG00000163114 PDHA2 / P29803 / pyruvate dehydrogenase E1 alpha 2 subunit  / reaction
 ENSG00000178445 GLDC / P23378 / glycine decarboxylase  / reaction
 ENSG00000083123 BCKDHB / P21953 / branched chain keto acid dehydrogenase E1 subunit beta  / reaction
 ENSG00000131828 PDHA1 / P08559 / pyruvate dehydrogenase E1 alpha 1 subunit  / reaction
 ENSG00000137992 DBT / P11182 / dihydrolipoamide branched chain transacylase E2  / reaction






 

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