ENSG00000145020


Homo sapiens

Features
Gene ID: ENSG00000145020
  
Biological name :AMT
  
Synonyms : aminomethyltransferase / AMT / P48728
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 3
Strand: -1
Band: p21.31
Gene start: 49416775
Gene end: 49422753
  
Corresponding Affymetrix probe sets: 204294_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000443200
Ensembl peptide - ENSP00000415619
Ensembl peptide - ENSP00000489620
Ensembl peptide - ENSP00000490871
Ensembl peptide - ENSP00000490601
Ensembl peptide - ENSP00000490482
Ensembl peptide - ENSP00000490465
Ensembl peptide - ENSP00000490324
Ensembl peptide - ENSP00000490251
Ensembl peptide - ENSP00000490160
Ensembl peptide - ENSP00000490153
Ensembl peptide - ENSP00000489969
Ensembl peptide - ENSP00000489856
Ensembl peptide - ENSP00000489760
Ensembl peptide - ENSP00000489758
Ensembl peptide - ENSP00000489628
Ensembl peptide - ENSP00000273588
Ensembl peptide - ENSP00000378747
Ensembl peptide - ENSP00000388068
Ensembl peptide - ENSP00000399943
Ensembl peptide - ENSP00000403821
NCBI entrez gene - 275     See in Manteia.
OMIM - 238310
RefSeq - NM_001164711
RefSeq - NM_000481
RefSeq - NM_001164710
RefSeq - NM_001164712
RefSeq Peptide - NP_001158182
RefSeq Peptide - NP_001158183
RefSeq Peptide - NP_001158184
RefSeq Peptide - NP_000472
swissprot - A0A1B0GUK9
swissprot - A0A1B0GU55
swissprot - A0A1B0GTV8
swissprot - A0A1B0GTM2
swissprot - A0A1B0GTB6
swissprot - A0A1B0GTA8
swissprot - F8WF62
swissprot - H0Y695
swissprot - A0A024R2U7
swissprot - P48728
swissprot - C9JXJ4
swissprot - B3KTU4
swissprot - A0A1B0GVP5
swissprot - A0A1B0GWC4
swissprot - A0A1B0GVD0
swissprot - A0A1B0GV07
swissprot - A0A1B0GUU7
Ensembl - ENSG00000145020
  
Related genetic diseases (OMIM): 605899 - Glycine encephalopathy, 605899
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 amtENSDARG00000010862Danio rerio
 AMTENSGALG00000025844Gallus gallus
 AmtENSMUSG00000032607Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
DMGDH / Q9UI17 / dimethylglycine dehydrogenaseENSG0000013283727
SARDH / Q9UL12 / sarcosine dehydrogenaseENSG0000012345323
PDPR / Q8NCN5 / pyruvate dehydrogenase phosphatase regulatory subunitENSG0000009085723


Protein motifs (from Interpro)
Interpro ID Name
 IPR006222  Aminomethyltransferase, folate-binding domain
 IPR006223  Glycine cleavage system T protein
 IPR013977  Glycine cleavage T-protein, C-terminal barrel domain
 IPR028896  Aminomethyltransferase-like
 IPR029043  Glycine cleavage T-protein/YgfZ, C-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006546 glycine catabolic process TAS
 biological_processGO:0019464 glycine decarboxylation via glycine cleavage system IMP
 biological_processGO:0032259 methylation IEA
 cellular_componentGO:0005654 nucleoplasm IDA
 cellular_componentGO:0005739 mitochondrion TAS
 cellular_componentGO:0005759 mitochondrial matrix TAS
 molecular_functionGO:0004047 aminomethyltransferase activity TAS
 molecular_functionGO:0008168 methyltransferase activity IEA
 molecular_functionGO:0008483 transaminase activity IEA
 molecular_functionGO:0016740 transferase activity IEA


Pathways (from Reactome)
Pathway description
Glycine degradation


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000711 Restlessness 
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 HP:0000718 Aggressive behavior "Aggressive behavior can denote verbal aggression, physical aggression against objects, physical aggression against people, and may also include aggression towards oneself." [HPO:curators]
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 HP:0000737 Irritability 
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 HP:0000752 Hyperactivity 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001254 Lethargy 
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 HP:0001274 Agenesis of corpus callosum "Absence of the corpus callosum as a result of the failure of the corpus callosum to develop, which can be the result of a failure in any one of the multiple steps of callosal development including cellular proliferation and migration, axonal growth or glial patterning at the midline." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001298 Encephalopathy 
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 HP:0001336 Myoclonus "Very brief, involuntary random muscular contractions occurring at rest, in response to sensory stimuli, or accompanying voluntary movements." [HPO:curators]
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001522 Death in infancy 
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 HP:0002154 Hyperglycinemia 
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 HP:0003108 Hyperglycinuria 
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 HP:0100247 Recurrent singultus "A contraction of the diaphragm that repeats several times per minute. In humans, the abrupt rush of air into the lungs causes the epiglottis to close, creating a hic sound. Also known as synchronous diaphragmatic flutter (SDF), or singultus, from the Latin singult, the act of catching one s breath while sobbing. The hiccup is an involuntary action involving a reflex arc." [HPO:sdoelken]
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 HP:0100710 Impulsivity 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000140905 GCSH / P23434 / glycine cleavage system protein H  / reaction






 

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