ENSG00000105953


Homo sapiens

Features
Gene ID: ENSG00000105953
  
Biological name :OGDH
  
Synonyms : OGDH / oxoglutarate dehydrogenase / Q02218
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 7
Strand: 1
Band: p13
Gene start: 44606572
Gene end: 44709066
  
Corresponding Affymetrix probe sets: 1554151_at (Human Genome U133 Plus 2.0 Array)   1554152_a_at (Human Genome U133 Plus 2.0 Array)   201282_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000222673
Ensembl peptide - ENSP00000486854
Ensembl peptide - ENSP00000414662
Ensembl peptide - ENSP00000411830
Ensembl peptide - ENSP00000398576
Ensembl peptide - ENSP00000392878
Ensembl peptide - ENSP00000388183
Ensembl peptide - ENSP00000388084
NCBI entrez gene - 4967     See in Manteia.
OMIM - 613022
RefSeq - XM_011515408
RefSeq - NM_001003941
RefSeq - NM_001165036
RefSeq - NM_002541
RefSeq - XM_005249759
RefSeq - XM_005249761
RefSeq Peptide - NP_001003941
RefSeq Peptide - NP_001158508
RefSeq Peptide - NP_002532
swissprot - E9PCR7
swissprot - C9J4G7
swissprot - A0A140VJQ5
swissprot - A0A0D9SFS3
swissprot - E9PDF2
swissprot - Q02218
swissprot - E9PFG7
Ensembl - ENSG00000105953
  
Related genetic diseases (OMIM): 203740 - Alpha-ketoglutarate dehydrogenase deficiency, 203740
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ogdhaENSDARG00000034270Danio rerio
 ogdhbENSDARG00000103428Danio rerio
 OGDHENSGALG00000014155Gallus gallus
 OgdhENSMUSG00000020456Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
OGDHL / Q9ULD0 / oxoglutarate dehydrogenase likeENSG0000019744476
DHTKD1 / Q96HY7 / dehydrogenase E1 and transketolase domain containing 1ENSG0000018119234


Protein motifs (from Interpro)
Interpro ID Name
 IPR001017  Dehydrogenase, E1 component
 IPR005475  Transketolase-like, pyrimidine-binding domain
 IPR011603  2-oxoglutarate dehydrogenase E1 component
 IPR029061  Thiamin diphosphate-binding fold
 IPR031717  Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal
 IPR032106  2-oxoglutarate dehydrogenase E1 component, N-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006091 generation of precursor metabolites and energy ISS
 biological_processGO:0006096 glycolytic process IEA
 biological_processGO:0006099 tricarboxylic acid cycle IEA
 biological_processGO:0006103 2-oxoglutarate metabolic process IEA
 biological_processGO:0006104 succinyl-CoA metabolic process IEA
 biological_processGO:0006554 lysine catabolic process TAS
 biological_processGO:0006734 NADH metabolic process IEA
 biological_processGO:0008152 metabolic process IEA
 biological_processGO:0021695 cerebellar cortex development IEA
 biological_processGO:0021756 striatum development IEA
 biological_processGO:0021766 hippocampus development IEA
 biological_processGO:0021794 thalamus development IEA
 biological_processGO:0021860 pyramidal neuron development IEA
 biological_processGO:0022028 tangential migration from the subventricular zone to the olfactory bulb IEA
 biological_processGO:0034641 cellular nitrogen compound metabolic process TAS
 biological_processGO:0055114 oxidation-reduction process IEA
 biological_processGO:0061034 olfactory bulb mitral cell layer development IEA
 biological_processGO:0106077 histone succinylation IDA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005739 mitochondrion IDA
 cellular_componentGO:0005759 mitochondrial matrix TAS
 cellular_componentGO:0031966 mitochondrial membrane ISS
 cellular_componentGO:0045252 oxoglutarate dehydrogenase complex IEA
 molecular_functionGO:0004591 oxoglutarate dehydrogenase (succinyl-transferring) activity IEA
 molecular_functionGO:0016491 oxidoreductase activity IEA
 molecular_functionGO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEA
 molecular_functionGO:0030976 thiamine pyrophosphate binding IEA
 molecular_functionGO:0031072 heat shock protein binding IEA
 molecular_functionGO:0034602 oxoglutarate dehydrogenase (NAD+) activity IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0051087 chaperone binding IEA


Pathways (from Reactome)
Pathway description
Glyoxylate metabolism and glycine degradation
Lysine catabolism
Citric acid cycle (TCA cycle)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000238 Hydrocephalus 
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 HP:0000816 Abnormality of Krebs cycle metabolism 
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 HP:0001251 Ataxia "Ataxia is a nonspecific neurological sign and symptom consisting of gross lack of coordination of muscle movements. Ataxia is caused by dysfunction of one or more parts of the nervous system including the cerebellum, the sensory nervous system, the vestibular system, or the cerebral cortex." [HPO:curators]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001276 Hypertonia 
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001942 Metabolic acidosis 
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 HP:0002151 Increased serum lactate "Abnormally increased level of blood lactate (2-hydroxypropanoic acid). Lactate is produced from pyruvate by lactate dehydrogenase during normal metabolism." [HPO:curators]
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 HP:0003202 Amyotrophy "The presence of muscular atrophy (which is also known as amyotrophy)." [HPO:curators]
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 HP:0003819 Death in childhood 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0004902 congenital lactic acidosis 
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 HP:0010286 Abnormality of the salivary glands "Any abnormality of the salivary glands, the exocrine glands that produce saliva." [HPO:curators]
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 HP:0012401 Abnormal urine alpha-ketoglutarate concentration "A deviation from normal of the concentration of `2-oxoglutaric acid` (CHEBI:30915) in the urine." [HPO:probinson]
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 HP:0100022 Abnormality of movement "An abnormality of movement with a neurological basis characterized by changes in coordination and speed of voluntary movements." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000091140 DLD / P09622 / dihydrolipoamide dehydrogenase  / complex
 ENSG00000105953 OGDH / Q02218 / oxoglutarate dehydrogenase  / complex
 ENSG00000140905 GCSH / P23434 / glycine cleavage system protein H  / reaction
 ENSG00000119689 DLST / P36957 / dihydrolipoamide S-succinyltransferase  / complex






 

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