ENSG00000131828


Homo sapiens

Features
Gene ID: ENSG00000131828
  
Biological name :PDHA1
  
Synonyms : P08559 / PDHA1 / pyruvate dehydrogenase E1 alpha 1 subunit
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: X
Strand: 1
Band: p22.12
Gene start: 19343893
Gene end: 19361705
  
Corresponding Affymetrix probe sets: 1555864_s_at (Human Genome U133 Plus 2.0 Array)   200979_at (Human Genome U133 Plus 2.0 Array)   200980_s_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000438550
Ensembl peptide - ENSP00000406473
Ensembl peptide - ENSP00000440761
Ensembl peptide - ENSP00000348062
Ensembl peptide - ENSP00000369132
Ensembl peptide - ENSP00000369133
Ensembl peptide - ENSP00000369134
Ensembl peptide - ENSP00000394382
Ensembl peptide - ENSP00000404616
NCBI entrez gene - 5160     See in Manteia.
OMIM - 300502
RefSeq - XM_017029574
RefSeq - NM_000284
RefSeq - NM_001173454
RefSeq - NM_001173455
RefSeq - NM_001173456
RefSeq Peptide - NP_000275
RefSeq Peptide - NP_001166925
RefSeq Peptide - NP_001166926
RefSeq Peptide - NP_001166927
swissprot - P08559
swissprot - Q5JPT9
swissprot - Q5JPU0
swissprot - Q5JPU1
swissprot - Q5JPU2
swissprot - Q5JPU3
swissprot - A0A024RBX9
Ensembl - ENSG00000131828
  
Related genetic diseases (OMIM): 312170 - Pyruvate dehydrogenase E1-alpha deficiency, 312170
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pdha1aENSDARG00000012387Danio rerio
 pdha1bENSDARG00000010555Danio rerio
 PDHA1ENSGALG00000016430Gallus gallus
 Pdha1ENSMUSG00000031299Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
PDHA2 / P29803 / pyruvate dehydrogenase E1 alpha 2 subunitENSG0000016311477
AC011462.1ENSG0000025573024
BCKDHA / P12694 / branched chain keto acid dehydrogenase E1, alpha polypeptideENSG0000024809823


Protein motifs (from Interpro)
Interpro ID Name
 IPR001017  Dehydrogenase, E1 component
 IPR017597  Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y
 IPR029061  Thiamin diphosphate-binding fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0005975 carbohydrate metabolic process IEA
 biological_processGO:0006006 glucose metabolic process IEA
 biological_processGO:0006086 acetyl-CoA biosynthetic process from pyruvate IDA
 biological_processGO:0006090 pyruvate metabolic process TAS
 biological_processGO:0006099 tricarboxylic acid cycle IEA
 biological_processGO:0008152 metabolic process IEA
 biological_processGO:0010510 regulation of acetyl-CoA biosynthetic process from pyruvate TAS
 biological_processGO:0034641 cellular nitrogen compound metabolic process TAS
 biological_processGO:0055114 oxidation-reduction process IEA
 biological_processGO:0061732 mitochondrial acetyl-CoA biosynthetic process from pyruvate IEA
 cellular_componentGO:0005634 nucleus HDA
 cellular_componentGO:0005730 nucleolus IDA
 cellular_componentGO:0005739 mitochondrion TAS
 cellular_componentGO:0005759 mitochondrial matrix TAS
 cellular_componentGO:0043209 myelin sheath IEA
 cellular_componentGO:0043231 intracellular membrane-bounded organelle IEA
 cellular_componentGO:0045254 pyruvate dehydrogenase complex IDA
 molecular_functionGO:0004738 pyruvate dehydrogenase activity IDA
 molecular_functionGO:0004739 pyruvate dehydrogenase (acetyl-transferring) activity IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0016491 oxidoreductase activity IEA
 molecular_functionGO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEA
 molecular_functionGO:0034604 pyruvate dehydrogenase (NAD+) activity IEA


Pathways (from Reactome)
Pathway description
Regulation of pyruvate dehydrogenase (PDH) complex
Glyoxylate metabolism and glycine degradation
Signaling by Retinoic Acid
Pyruvate metabolism


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000343 Long philtrum 
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 HP:0000365 Hearing loss 
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 HP:0000431 Broad nasal bridge "Increased horizontal dimension of the upper, bony part of the nose." [HPO:curators]
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 HP:0000454 Flared nostrils 
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 HP:0000463 Nares, anteverted "Anteriorly-facing nostrils viewed with the head in the Frankfurt horizontal and the eyes of the observer level with the eyes of the subject." [pmid:19152422]
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 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
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 HP:0000496 Abnormality of eye movement "An abnormality in voluntary or involuntary eye movements or their control." [HPO:probinson]
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 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
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 HP:0000580 Pigmentary retinopathy 
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 HP:0000602 Ophthalmoplegia 
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 HP:0000639 Nystagmus "Rhythmic, involuntary oscillations of one or both eyes related to abnormality in fixation, conjugate gaze, or vestibular mechanisms." [HPO:curators]
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 HP:0000648 Optic atrophy 
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 HP:0000712 Emotional lability 
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 HP:0000998 Hypertrichosis "Hypertrichosis is increased hair growth that is abnormal in quantity or location." [HPO:curators]
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001254 Lethargy 
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 HP:0001260 Dysarthria "Dysarthric speech is a general description referring to a neurological speech disorder characterized by poor articulation. Depending on the involved neurological structures, dysarthria may be further classified as spastic, flaccid, ataxic, hyperkinetic and hypokinetic, or mixed." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001266 Choreoathetosis 
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 HP:0001274 Agenesis of corpus callosum "Absence of the corpus callosum as a result of the failure of the corpus callosum to develop, which can be the result of a failure in any one of the multiple steps of callosal development including cellular proliferation and migration, axonal growth or glial patterning at the midline." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001332 Dystonia "An abnormally increased muscular tone that causes fixed abnormal postures. There is a slow, intermittent twisting motion that leads to exaggerated turning and posture of the extremities and trunk." [HPO:curators]
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0001423 X-linked dominant inheritance "A mode of inheritance that is observed for dominant traits related to a gene encoded on the X chromosome. In the context of medical genetics, X-linked dominant disorders tend to manifest very severely in affected males. The severity of manifestation in females may depend on the degree of skewed X inactivation." [HPO:curators]
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 HP:0001508 Failure to thrive 
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 HP:0001518 Low birth weight 
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 HP:0001629 Ventricular septal defect "A hole between the two bottom chambers (ventricles) of the heart. The defect is centered around the most superior aspect of the ventricular septum." [HPO:curators]
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 HP:0001639 Hypertrophic cardiomyopathy 
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 HP:0001903 Anemia 
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 HP:0001999 Facial dysmorphism 
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 HP:0002007 Frontal bossing "The presence of an unusually prominent forehead." [HPO:curators]
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 HP:0002059 Cerebral atrophy 
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 HP:0002073 Progressive cerebellar ataxia 
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 HP:0002104 Apnea "Lack of breathing with no movement of the respiratory muscles and no exchange of air in the lungs. This term refers to a disposition to have recurrent episodes of apnea rather than to a single event." [HPO:curators]
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 HP:0002119 Ventriculomegaly 
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 HP:0002131 Ataxia, episodic 
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 HP:0002151 Increased serum lactate "Abnormally increased level of blood lactate (2-hydroxypropanoic acid). Lactate is produced from pyruvate by lactate dehydrogenase during normal metabolism." [HPO:curators]
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 HP:0002415 Leukodystrophy 
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 HP:0002490 Increased CSF lactate "Increased concentration of lactate in the cerebrospinal fluid." [HPO:curators]
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 HP:0002872 Apneic episodes precipitated by illness, fatigue, stress "Recurrent episodes of apnea that are precipitated by factors such as illness, fatigue, or stress." [HPO:curators]
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 HP:0002928 Decreased activity of the pyruvate dehydrogenase (PDH) complex 
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 HP:0003348 Hyperalaninemia 
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 HP:0003593 Early onset 
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 HP:0003812 Phenotypic variability 
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 HP:0004900 lactic acidosis, severe 
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 HP:0004925 lactic acidosis, chronic 
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 HP:0006799 Basal ganglia cysts 
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 HP:0007020 Progressive spastic paraplegia 
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 HP:0007183 Hyperintense lesions in the basal ganglia on mri 
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 HP:0008972 Decreased activities of mitochondrial-encoded respiratory chain complexes 
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 HP:0009830 Peripheral neuropathy "Peripheral neuropathy is a general term for any disorder of the peripheral nervous system. The main clinical features used to classify peripheral neuropathy are distribution, type (mainly demyelinating versus mainly axonal), duration, and course." [HPO:curators]
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 HP:0010864 Mental retardation, severe "Moderate mental retardation is defined as an intelligence quotient (IQ) in the range of 20-34." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000004799 PDK4 / Q16654 / pyruvate dehydrogenase kinase 4  / reaction
 ENSG00000005882 PDK2 / Q15119 / pyruvate dehydrogenase kinase 2  / reaction
 ENSG00000110435 PDHX / O00330 / pyruvate dehydrogenase complex component X  / complex
 ENSG00000152256 PDK1 / Q15118 / pyruvate dehydrogenase kinase 1  / reaction
 ENSG00000091140 DLD / P09622 / dihydrolipoamide dehydrogenase  / complex
 ENSG00000140905 GCSH / P23434 / glycine cleavage system protein H  / reaction
 ENSG00000150768 DLAT / P10515 / dihydrolipoamide S-acetyltransferase  / complex
 ENSG00000131828 PDHA1 / P08559 / pyruvate dehydrogenase E1 alpha 1 subunit  / complex
 ENSG00000168291 PDHB / P11177 / pyruvate dehydrogenase E1 beta subunit  / complex
 ENSG00000163114 PDHA2 / P29803 / pyruvate dehydrogenase E1 alpha 2 subunit  / complex
 ENSG00000067992 PDK3 / Q15120 / pyruvate dehydrogenase kinase 3  / reaction






 

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