ENSG00000181830


Homo sapiens

Features
Gene ID: ENSG00000181830
  
Biological name :SLC35C1
  
Synonyms : Q96A29 / SLC35C1 / solute carrier family 35 member C1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 11
Strand: 1
Band: p11.2
Gene start: 45804072
Gene end: 45813015
  
Corresponding Affymetrix probe sets: 218485_s_at (Human Genome U133 Plus 2.0 Array)   222647_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000313318
Ensembl peptide - ENSP00000432669
Ensembl peptide - ENSP00000432145
Ensembl peptide - ENSP00000412408
NCBI entrez gene - 55343     See in Manteia.
OMIM - 605881
RefSeq - NM_001145265
RefSeq - NM_001145266
RefSeq - NM_018389
RefSeq Peptide - NP_001138738
RefSeq Peptide - NP_060859
RefSeq Peptide - NP_001138737
swissprot - Q96A29
swissprot - E9PPI4
swissprot - B3KQH0
swissprot - E9PS26
Ensembl - ENSG00000181830
  
Related genetic diseases (OMIM): 266265 - Congenital disorder of glycosylation, type IIc, 266265
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 slc35c1ENSDARG00000104669Danio rerio
 SLC35C1ENSGALG00000008438Gallus gallus
 Q8BLX4ENSMUSG00000049922Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR004853  Sugar phosphate transporter domain
 IPR029666  GDP-fucose transporter


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008643 carbohydrate transport IEA
 biological_processGO:0030259 lipid glycosylation IEA
 biological_processGO:0036085 GDP-fucose import into Golgi lumen IEA
 biological_processGO:0045746 negative regulation of Notch signaling pathway IEA
 cellular_componentGO:0000139 Golgi membrane TAS
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005457 GDP-fucose transmembrane transporter activity IEA


Pathways (from Reactome)
Pathway description
Defective SLC35C1 causes congenital disorder of glycosylation 2C (CDG2C)
GDP-fucose biosynthesis
Transport of nucleotide sugars


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000280 Coarse facial features 
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 HP:0000349 Widow s peak 
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 HP:0000403 Recurrent otitis media 
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 HP:0000414 Bulbous nose 
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 HP:0000704 Periodontal disease 
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 HP:0000717 Autism 
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 HP:0000722 Obsessive-compulsive disorder 
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 HP:0000739 Anxiety 
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 HP:0001156 Brachydactyly 
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 HP:0001252 Muscular hypotonia "Muscular hypotonia is an abnormally low muscle tone (the amount of tension or resistance to movement in a muscle), often involving reduced muscle strength. Hypotonia is characterized by a diminished resistance to passive stretching." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001574 Integument abnormality 
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 HP:0001773 Short, broad feet "Abnormally short and wide feet." [HPO:curators]
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 HP:0001939 Metabolism abnormality 
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 HP:0002090 Pneumonia 
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 HP:0002120 Cerebral cortical atrophy 
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 HP:0002373 Febrile seizures "Febrile seizures are convulsions induced by a fever in infants or small children and are generally characterized by loss of consciousness and tonic-clonic movements. Most febrile seizures last a minute or two." [HPO:curators]
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0005400 Markedly reduced neutrophil motility 
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 HP:0006887 Mental retardation, progressive "Mental retardation is defined as a decreased intelligence quotient of varying degree. The term progressive mental retardation should be used if intelligence decreases/deteriorates over time." [HPO:curators]
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 HP:0010529 Echolalia "The tendency to repeat vocalizations made by another person." [HPO:curators]
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 HP:0010864 Mental retardation, severe "Moderate mental retardation is defined as an intelligence quotient (IQ) in the range of 20-34." [HPO:probinson]
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 HP:0011950 Bronchiolitis "Inflammation of the `bronchioles` (FMA:76497)." [DDD:tkuijpers]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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