ENSG00000182636


Homo sapiens

Features
Gene ID: ENSG00000182636
  
Biological name :NDN
  
Synonyms : NDN / necdin, MAGE family member / Q99608
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 15
Strand: -1
Band: q11.2
Gene start: 23685400
Gene end: 23687330
  
Corresponding Affymetrix probe sets: 209550_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000332643
NCBI entrez gene - 4692     See in Manteia.
OMIM - 602117
RefSeq - NM_002487
RefSeq Peptide - NP_002478
swissprot - Q99608
swissprot - X5D982
Ensembl - ENSG00000182636
  
Related genetic diseases (OMIM): 176270 - Prader-Willi syndrome, 176270
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ndnl2ENSDARG00000058212Danio rerio
 NdnENSMUSG00000033585Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
MAGED2 / Q9UNF1 / MAGE family member D2ENSG0000010231637
MAGEL2 / Q9UJ55 / MAGE family member L2ENSG0000025458536
TRO / Q12816 / trophininENSG0000006744536
MAGEF1 / Q9HAY2 / MAGE family member F1ENSG0000017738333
NSMCE3 / Q96MG7 / NSE3 homolog, SMC5-SMC6 complex componentENSG0000018511531
MAGED1 / Q9Y5V3 / MAGE family member D1ENSG0000017922231
Q96JG8 / MAGED4B / MAGE family member D4BENSG0000018724330
MAGED4 / Q96JG8 / MAGE family member D4ENSG0000015454530
MAGEE1 / Q9HCI5 / MAGE family member E1ENSG0000019893429
MAGEB1 / P43366 / MAGE family member B1ENSG0000021410729
Q96LZ2 / MAGEB10 / MAGE family member B10ENSG0000017768928
MAGEB4 / O15481 / MAGE family member B4ENSG0000012028928
A2A368 / MAGEB16 / MAGE family member B16ENSG0000018902327
Q96M61 / MAGEB18 / MAGE family member B18ENSG0000017677427
MAGEB6B / MAGE family member B6BENSG0000023203027
MAGEB6 / Q8N7X4 / MAGE family member B6ENSG0000017674627
MAGEB3 / O15480 / MAGE family member B3ENSG0000019879826
P43363 / MAGEA10 / MAGE family member A10ENSG0000012426026
MAGEB2 / O15479 / MAGE family member B2ENSG0000009939926
A8MXT2 / MAGEB17 / MAGE family member B17ENSG0000018279826


Protein motifs (from Interpro)
Interpro ID Name
 IPR002190  MAGE homology domain
 IPR030086  Necdin
 IPR037445  Melanoma-associated antigen


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001764 neuron migration IEA
 biological_processGO:0003016 respiratory system process IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0007399 nervous system development TAS
 biological_processGO:0007409 axonogenesis IEA
 biological_processGO:0007413 axonal fasciculation IEA
 biological_processGO:0007417 central nervous system development IEA
 biological_processGO:0007585 respiratory gaseous exchange IEA
 biological_processGO:0008285 negative regulation of cell proliferation TAS
 biological_processGO:0008347 glial cell migration IEA
 biological_processGO:0009791 post-embryonic development IEA
 biological_processGO:0019221 cytokine-mediated signaling pathway TAS
 biological_processGO:0019233 sensory perception of pain IEA
 biological_processGO:0040008 regulation of growth IEA
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IEA
 biological_processGO:0048011 neurotrophin TRK receptor signaling pathway IEA
 biological_processGO:0048666 neuron development IEA
 biological_processGO:0048675 axon extension IEA
 biological_processGO:0048871 multicellular organismal homeostasis IEA
 biological_processGO:0071514 genetic imprinting IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005813 centrosome IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0042995 cell projection IEA
 cellular_componentGO:0043204 perikaryon IEA
 molecular_functionGO:0000978 RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0001077 transcriptional activator activity, RNA polymerase II proximal promoter sequence-specific DNA binding IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043015 gamma-tubulin binding IEA


Pathways (from Reactome)
Pathway description
Interleukin-4 and Interleukin-13 signaling


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000028 Cryptorchidism "Absence of one or both testes from the scrotum owing to failure of the testis or testes to descend through the inguinal canal to the testis." [HPO:curators]
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 HP:0000044 Hypogonadotrophic hypogonadism "Hypogonadotropic hypogonadism is characterized by reduced function of the gonads (testes in males or ovaries in females) and results from the absence of the gonadal stimulating pituitary hormones: follicle stimulating hormone (FSH) and luteinizing hormone (LH)." [HPO:curators]
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 HP:0000046 Scrotal hypoplasia 
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 HP:0000054 Micropenis 
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 HP:0000060 Hypoplastic clitoris 
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 HP:0000064 Hypoplastic labia minora 
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 HP:0000219 Thin upper lip 
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 HP:0000268 Dolichocephaly 
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 HP:0000341 Narrow forehead "An abnormally reduced side-to-side width of the forehead." [HPO:curators]
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 HP:0000446 Narrow nasal bridge 
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 HP:0000540 Hypermetropia 
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 HP:0000545 Myopia 
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 HP:0000565 Esotropia 
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 HP:0000582 Upslanting palpebral fissures 
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 HP:0000670 Carious teeth 
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 HP:0000709 Psychosis "A condition characterized by changes of personality and thought patterns often accompanied by hallucinations and delusional beliefs." [HPO:curators]
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 HP:0000717 Autism 
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 HP:0000750 Impaired language development 
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 HP:0000786 Primary amenorrhea 
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 HP:0000789 Infertility 
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 HP:0000823 Delayed puberty 
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 HP:0000824 Growth hormone deficiency "Insufficient production of growth hormone, which is produced by the anterior pituitary gland." [HPO:curators]
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 HP:0000826 Precocious puberty "The onset of secondary sexual characteristics before a normal age. Although it is difficult to define normal age ranges because of the marked variation with which puberty begins in normal children, precocious puberty can be defined as the onset of puberty before the age of 8 years in girls or 9 years in boys." [HPO:curators]
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 HP:0000842 Hyperinsulinemia 
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 HP:0000846 Adrenal insufficiency 
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 HP:0000876 Oligomenorrhea 
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 HP:0000938 Osteopenia "Osteopenia refers to a reduction in bone mineral density (BMD) below normal peak BMD but not low enough to be classified as osteoporosis. According to the WHO, osteopenia is characterized by a value of BMD more than 1 standard deviation below the young adult mean, but less than 2 standard deviations below this value." [HPO:curators]
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 HP:0000939 Osteoporosis "Osteoporosis is a systemic skeletal disease characterized by low bone density and microarchitectural deterioration of bone tissue with a consequent increase in bone fragility. According to the WHO, osteoporosis is characterized by a value of BMD 2.5 standard deviations or more below the young adult mean." [HPO:curators]
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 HP:0000992 Photosensitivity "An increased sensitivity of the skin to light. Photosensitivity may result in a rash upon exposure to the sun (which is known as photodermatosis). Photosensitivity can be diagnosed by phototests in which light is shone on small areas of skin." [HPO:curators]
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 HP:0001159 Syndactyly "Webbing or fusion of the fingers or toes, involving soft parts only or including bone structure. Bony fusions are revered to as "bony" Syndactyly if the fusion occurs in a radio-ulnar axis. Fusions of bones of the fingers or toes in a proximo-distal axis are refered to as "Symphalangism"." [HPO:curators]
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001270 Motor retardation 
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001328 Learning disability 
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 HP:0001385 Hip dysplasia 
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 HP:0001531 Failure to thrive in infancy 
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 HP:0001558 Decreased fetal movement "An abnormal reduction in quantity or strength of fetal movements." [HPO:curators]
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 HP:0001611 Nasal speech 
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 HP:0001773 Short, broad feet "Abnormally short and wide feet." [HPO:curators]
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 HP:0002033 Poor suck "An inadequate sucking reflex, resulting in the difficult of newborns to be breast-fed." [HPO:curators]
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 HP:0002119 Ventriculomegaly 
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 HP:0002205 Recurrent respiratory infections 
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 HP:0002236 Frontal hair upsweep "A frontal hair upsweep (also known as cowlick) refers to a lock of hair that stands straight up." [HPO:curators]
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 HP:0002591 Polyphagia 
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 HP:0002650 Scoliosis "The presence of an abnormal lateral curvature of the spine." [HPO:curators]
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 HP:0002714 Downturned corners of mouth "A morphological `abnormality of the mouth` (HP:0000153) in which the `angle of the mouth` (FMA:77269) is downturned." [HPO:probinson]
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 HP:0002791 Hypoventilation 
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 HP:0002808 Kyphosis 
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 HP:0003199 Decreased muscle mass 
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 HP:0003745 Sporadic 
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 HP:0004279 Hypoplastic hand 
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 HP:0004283 Narrow hand 
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0005599 Hair hypopigmentation 
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 HP:0005968 Temperature instability "Disordered thermoregulation characterized by an impaired ability to maintain a balance between heat production and heat loss, with resulting instability of body temperature." [HPO:curators]
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 HP:0005978 Noninsulin-dependent diabetes mellitus 
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 HP:0007010 Poor fine motor coordination 
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 HP:0007015 Poor fine and gross motor coordination 
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 HP:0007018 Attention deficit hyperactivity disorder "Attention deficit hyperactivity disorder (ADHD) manifests at age 2-3 years or by first grade at the latest. The main symptoms are distractibility, impulsivity, hyperactivity, and often trouble organizing tasks and projects, difficulty going to sleep, and social problems from being aggressive, loud, or impatient." [HPO:curators]
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 HP:0007328 Decreased pain sensation "Reduced ability to perceive painful stimuli." [HPO:curators]
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 HP:0007513 Generalized hypopigmentation 
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 HP:0007730 Reduced iris pigmentation 
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 HP:0007874 Almond-shaped palpebral fissures 
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 HP:0009466 Radial deviation of fingers 
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 HP:0010535 Sleep apnea "An intermittent cessation of airflow at the mouth and nose during sleep. Apneas of at least 10 seconds are considered important, but persons with sleep apnea may have apneas of 20 seconds to up to 2 or 3 minutes. Patients may have up to 15 events per hour of sleep." [HPO:curators]
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 HP:0012743 Abdominal obesity "Excessive fat around the stomach and abdomen." [HPO:probinson]
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 HP:0030084 Clinodactyly "An angulation of a digit at an interphalangeal joint in the plane of the palm (finger) or sole (toe)." [pmid:16252026]
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 HP:0200055 Small hands 
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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