ENSG00000183044


Homo sapiens

Features
Gene ID: ENSG00000183044
  
Biological name :ABAT
  
Synonyms : 4-aminobutyrate aminotransferase / ABAT / P80404
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 16
Strand: 1
Band: p13.2
Gene start: 8674565
Gene end: 8784575
  
Corresponding Affymetrix probe sets: 206527_at (Human Genome U133 Plus 2.0 Array)   209459_s_at (Human Genome U133 Plus 2.0 Array)   209460_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000456392
Ensembl peptide - ENSP00000456267
Ensembl peptide - ENSP00000456330
Ensembl peptide - ENSP00000268251
Ensembl peptide - ENSP00000379845
Ensembl peptide - ENSP00000411916
Ensembl peptide - ENSP00000454415
Ensembl peptide - ENSP00000454963
Ensembl peptide - ENSP00000455184
Ensembl peptide - ENSP00000455198
Ensembl peptide - ENSP00000455502
NCBI entrez gene - 18     See in Manteia.
OMIM - 137150
RefSeq - XM_011522401
RefSeq - NM_000663
RefSeq - NM_001127448
RefSeq - NM_020686
RefSeq - XM_011522400
RefSeq Peptide - NP_001120920
RefSeq Peptide - NP_065737
RefSeq Peptide - NP_000654
swissprot - P80404
swissprot - X5D8S1
swissprot - H3BMJ9
swissprot - H3BNQ7
swissprot - H3BP74
swissprot - H3BP84
swissprot - H3BRJ1
swissprot - H3BPW8
swissprot - H3BRN4
swissprot - H3BRT1
Ensembl - ENSG00000183044
  
Related genetic diseases (OMIM): 613163 - GABA-transaminase deficiency, 613163
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 abatENSDARG00000006031Danio rerio
 ABATENSGALG00000007334Gallus gallus
 AbatENSMUSG00000057880Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR004631  4-aminobutyrate aminotransferase, eukaryotic
 IPR005814  Aminotransferase class-III
 IPR015421  Pyridoxal phosphate-dependent transferase, major domain
 IPR015422  Pyridoxal phosphate-dependent transferase domain 1
 IPR015424  Pyridoxal phosphate-dependent transferase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001666 response to hypoxia IEA
 biological_processGO:0007568 aging IEA
 biological_processGO:0007620 copulation IEA
 biological_processGO:0007626 locomotory behavior IEA
 biological_processGO:0009448 gamma-aminobutyric acid metabolic process IEA
 biological_processGO:0009449 gamma-aminobutyric acid biosynthetic process IEA
 biological_processGO:0009450 gamma-aminobutyric acid catabolic process NAS
 biological_processGO:0010039 response to iron ion IEA
 biological_processGO:0014053 negative regulation of gamma-aminobutyric acid secretion IEA
 biological_processGO:0021549 cerebellum development IEA
 biological_processGO:0031652 positive regulation of heat generation IEA
 biological_processGO:0032024 positive regulation of insulin secretion IEA
 biological_processGO:0033602 negative regulation of dopamine secretion IEA
 biological_processGO:0035094 response to nicotine IEA
 biological_processGO:0035640 exploration behavior IEA
 biological_processGO:0042135 neurotransmitter catabolic process NAS
 biological_processGO:0042220 response to cocaine IEA
 biological_processGO:0042493 response to drug IEA
 biological_processGO:0045471 response to ethanol IEA
 biological_processGO:0045776 negative regulation of blood pressure IEA
 biological_processGO:0045964 positive regulation of dopamine metabolic process IEA
 biological_processGO:0048148 behavioral response to cocaine IEA
 biological_processGO:0070474 positive regulation of uterine smooth muscle contraction IEA
 biological_processGO:0090331 negative regulation of platelet aggregation IEA
 biological_processGO:0097151 positive regulation of inhibitory postsynaptic potential IEA
 biological_processGO:1902722 positive regulation of prolactin secretion IEA
 biological_processGO:1904450 positive regulation of aspartate secretion IEA
 cellular_componentGO:0005739 mitochondrion ISS
 cellular_componentGO:0005759 mitochondrial matrix TAS
 cellular_componentGO:0032144 4-aminobutyrate transaminase complex IDA
 cellular_componentGO:0043005 neuron projection IEA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0003824 catalytic activity IEA
 molecular_functionGO:0003867 4-aminobutyrate transaminase activity TAS
 molecular_functionGO:0008483 transaminase activity IEA
 molecular_functionGO:0016740 transferase activity IEA
 molecular_functionGO:0030170 pyridoxal phosphate binding IDA
 molecular_functionGO:0032145 succinate-semialdehyde dehydrogenase binding ISS
 molecular_functionGO:0034386 4-aminobutyrate:2-oxoglutarate transaminase activity IEA
 molecular_functionGO:0042803 protein homodimerization activity IPI
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0047298 (S)-3-amino-2-methylpropionate transaminase activity IEA
 molecular_functionGO:0051536 iron-sulfur cluster binding IEA


Pathways (from Reactome)
Pathway description
Degradation of GABA


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000098 Increased body height 
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 HP:0000278 Retrognathia 
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 HP:0000494 Downward slanting palpebral fissures 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001254 Lethargy 
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001274 Agenesis of corpus callosum "Absence of the corpus callosum as a result of the failure of the corpus callosum to develop, which can be the result of a failure in any one of the multiple steps of callosal development including cellular proliferation and migration, axonal growth or glial patterning at the midline." [HPO:curators]
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 HP:0001321 Cerebellar hypoplasia 
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 HP:0001347 Hyperreflexia "The presence of overactive or overresponsive reflexes." [HPO:curators]
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 HP:0002415 Leukodystrophy 
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 HP:0003819 Death in childhood 
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 HP:0006829 Severe muscular hypotonia "A severe degree of muscular hypotonia characterized by markedly reduced muscle tone." [HPO:curators]
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 HP:0007291 Posterior fossa cysts 
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 HP:0025430 High-pitched cry "A type of crying in an abnormally high-pitched voice." []
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000183044 ABAT / P80404 / 4-aminobutyrate aminotransferase  / complex






 

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