ENSG00000189056


Homo sapiens

Features
Gene ID: ENSG00000189056
  
Biological name :RELN
  
Synonyms : P78509 / reelin / RELN
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 7
Strand: -1
Band: q22.1
Gene start: 103471784
Gene end: 103989516
  
Corresponding Affymetrix probe sets: 205923_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000345694
Ensembl peptide - ENSP00000388446
Ensembl peptide - ENSP00000392423
Ensembl peptide - ENSP00000404818
NCBI entrez gene - 5649     See in Manteia.
OMIM - 600514
RefSeq - NM_173054
RefSeq - NM_005045
RefSeq Peptide - NP_005036
RefSeq Peptide - NP_774959
swissprot - P78509
swissprot - H7C2B0
swissprot - J3KQ66
Ensembl - ENSG00000189056
  
Related genetic diseases (OMIM): 257320 - Lissencephaly 2 (Norman-Roberts type), 257320
  616436 - {Epilepsy, familial temporal lobe, 7}, 616436
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CABZ01113373.1ENSDARG00000110545Danio rerio
 RELNENSGALG00000008193Gallus gallus
 RelnENSMUSG00000042453Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000742  EGF-like domain
 IPR002861  Reeler domain
 IPR008979  Galactose-binding-like domain superfamily
 IPR013032  EGF-like, conserved site
 IPR034968  Reelin
 IPR036278  Sialidase superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000904 cell morphogenesis involved in differentiation ISS
 biological_processGO:0001764 neuron migration IEA
 biological_processGO:0006508 proteolysis IEA
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0007411 axon guidance ISS
 biological_processGO:0007417 central nervous system development IEA
 biological_processGO:0007420 brain development ISS
 biological_processGO:0007612 learning IEA
 biological_processGO:0007616 long-term memory IEA
 biological_processGO:0008306 associative learning IEA
 biological_processGO:0010001 glial cell differentiation ISS
 biological_processGO:0010468 regulation of gene expression IEA
 biological_processGO:0010976 positive regulation of neuron projection development ISS
 biological_processGO:0014068 positive regulation of phosphatidylinositol 3-kinase signaling IEA
 biological_processGO:0016358 dendrite development IEA
 biological_processGO:0016477 cell migration IEA
 biological_processGO:0018108 peptidyl-tyrosine phosphorylation ISS
 biological_processGO:0021511 spinal cord patterning ISS
 biological_processGO:0021517 ventral spinal cord development IEA
 biological_processGO:0021766 hippocampus development ISS
 biological_processGO:0021800 cerebral cortex tangential migration ISS
 biological_processGO:0021819 layer formation in cerebral cortex IEA
 biological_processGO:0021987 cerebral cortex development IEA
 biological_processGO:0030900 forebrain development IEA
 biological_processGO:0032008 positive regulation of TOR signaling IEA
 biological_processGO:0032793 positive regulation of CREB transcription factor activity ISS
 biological_processGO:0035418 protein localization to synapse IEA
 biological_processGO:0038026 reelin-mediated signaling pathway ISS
 biological_processGO:0045860 positive regulation of protein kinase activity ISS
 biological_processGO:0048265 response to pain ISS
 biological_processGO:0050731 positive regulation of peptidyl-tyrosine phosphorylation ISS
 biological_processGO:0050795 regulation of behavior ISS
 biological_processGO:0050804 modulation of chemical synaptic transmission ISS
 biological_processGO:0051057 positive regulation of small GTPase mediated signal transduction ISS
 biological_processGO:0051968 positive regulation of synaptic transmission, glutamatergic ISS
 biological_processGO:0060291 long-term synaptic potentiation IEA
 biological_processGO:0061003 positive regulation of dendritic spine morphogenesis ISS
 biological_processGO:0061098 positive regulation of protein tyrosine kinase activity ISS
 biological_processGO:0090129 positive regulation of synapse maturation ISS
 biological_processGO:0097114 NMDA glutamate receptor clustering IEA
 biological_processGO:0097119 postsynaptic density protein 95 clustering IEA
 biological_processGO:0097120 receptor localization to synapse IEA
 biological_processGO:0097477 lateral motor column neuron migration IEA
 biological_processGO:1900273 positive regulation of long-term synaptic potentiation ISS
 biological_processGO:1902078 positive regulation of lateral motor column neuron migration IEA
 biological_processGO:2000310 regulation of NMDA receptor activity ISS
 biological_processGO:2000463 positive regulation of excitatory postsynaptic potential ISS
 biological_processGO:2000969 positive regulation of AMPA receptor activity ISS
 cellular_componentGO:0005576 extracellular region TAS
 cellular_componentGO:0005615 extracellular space ISS
 cellular_componentGO:0005737 cytoplasm ISS
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0030425 dendrite ISS
 molecular_functionGO:0008233 peptidase activity IEA
 molecular_functionGO:0008236 serine-type peptidase activity IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0070325 lipoprotein particle receptor binding IEA
 molecular_functionGO:0070326 very-low-density lipoprotein particle receptor binding ISS


Pathways (from Reactome)
Pathway description
Reelin signalling pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
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 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000340 Sloping forehead "A form of the forehead that slopes from top to bottom in an anterior direction." [HPO:curators]
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 HP:0000426 Prominent nasal bridge 
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 HP:0002349 Simple partial seizures "A `partial seizure` (HP:0007359) in which consciousness is maintained." [HPO:probinson]
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 HP:0002384 Complex partial seizures "A `partial seizure` (HP:0007359) characterized by impairment or loss of consciousness." [HPO:curators]
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 HP:0003829 Incomplete penetrance 
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 HP:0006818 Type I lissencephaly 
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 HP:0006891 Thick cerebral cortex 
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 HP:0007334 Partial seizures with secondary generalization "`Partial seizures` (HP:0007359) with secondary evolution into a `generalized seizures` (HP:0002197)." [HPO:probinson]
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 HP:0011158 Auditory auras "Auras with sensations of buzzing, drumming sounds or single tones." [HPO:jalbers]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000010810 FYN / P06241 / FYN proto-oncogene, Src family tyrosine kinase  / reaction
 ENSG00000173406 DAB1 / O75553 / DAB1, reelin adaptor protein  / complex / reaction
 ENSG00000147852 VLDLR / P98155 / very low density lipoprotein receptor  / reaction / complex
 ENSG00000147010 Q96B97 / SH3KBP1 / SH3 domain containing kinase binding protein 1  / complex / reaction






 

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