ENSG00000196504


Homo sapiens

Features
Gene ID: ENSG00000196504
  
Biological name :PRPF40A
  
Synonyms : O75400 / pre-mRNA processing factor 40 homolog A / PRPF40A
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: -1
Band: q23.3
Gene start: 152651593
Gene end: 152717997
  
Corresponding Affymetrix probe sets: 213729_at (Human Genome U133 Plus 2.0 Array)   214941_s_at (Human Genome U133 Plus 2.0 Array)   218053_at (Human Genome U133 Plus 2.0 Array)   226687_at (Human Genome U133 Plus 2.0 Array)   233080_s_at (Human Genome U133 Plus 2.0 Array)   236477_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000386458
Ensembl peptide - ENSP00000441656
Ensembl peptide - ENSP00000444656
Ensembl peptide - ENSP00000346332
Ensembl peptide - ENSP00000406924
NCBI entrez gene - 55660     See in Manteia.
OMIM - 612941
RefSeq - XM_017004461
RefSeq - XM_017004454
RefSeq - XM_017004455
RefSeq - XM_017004456
RefSeq - XM_017004457
RefSeq - XM_017004458
RefSeq - XM_017004459
RefSeq - XM_017004460
RefSeq - NM_001354432
RefSeq - NM_017892
RefSeq - XM_005246676
RefSeq - XM_005246677
RefSeq - XM_011511446
RefSeq - XM_011511447
RefSeq - XM_011511448
RefSeq - XM_011511449
RefSeq - XM_017004453
RefSeq Peptide - NP_001341361
RefSeq Peptide - NP_060362
swissprot - H7C2N3
swissprot - H0YG38
swissprot - F5H578
swissprot - O75400
swissprot - H7BXZ7
Ensembl - ENSG00000196504
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q9R1C7ENSMUSG00000061136Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q6NWY9 / PRPF40B / pre-mRNA processing factor 40 homolog BENSG0000011084456
O14776 / TCERG1 / transcription elongation regulator 1ENSG0000011364919
Q5VWI1 / TCERG1L / transcription elongation regulator 1 likeENSG000001767699


Protein motifs (from Interpro)
Interpro ID Name
 IPR001202  WW domain
 IPR002713  FF domain
 IPR036020  WW domain superfamily
 IPR036517  FF domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome TAS
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0007010 cytoskeleton organization IMP
 biological_processGO:0007049 cell cycle IEA
 biological_processGO:0008360 regulation of cell shape IMP
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0016477 cell migration IMP
 biological_processGO:0032465 regulation of cytokinesis IMP
 biological_processGO:0051301 cell division IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005685 U1 snRNP IBA
 cellular_componentGO:0005829 cytosol IDA
 cellular_componentGO:0016020 membrane HDA
 cellular_componentGO:0016363 nuclear matrix IEA
 cellular_componentGO:0016607 nuclear speck IDA
 cellular_componentGO:0071004 U2-type prespliceosome IBA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0070064 proline-rich region binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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