ENSMUSG00000061136


Mus musculus

Features
Gene ID: ENSMUSG00000061136
  
Biological name :Prpf40a
  
Synonyms : Pre-mRNA-processing factor 40 homolog A / Prpf40a / Q9R1C7
  
Possible biological names infered from orthology : O75400
  
Species: Mus musculus
  
Chr. number: 2
Strand: -1
Band: C1.1
Gene start: 53134704
Gene end: 53191284
  
Corresponding Affymetrix probe sets: 10482731 (MoGene1.0st)   1420916_at (Mouse Genome 430 2.0 Array)   1420917_at (Mouse Genome 430 2.0 Array)   1429436_at (Mouse Genome 430 2.0 Array)   1429437_at (Mouse Genome 430 2.0 Array)   1442171_at (Mouse Genome 430 2.0 Array)   1450035_a_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000117406
Ensembl peptide - ENSMUSP00000148161
Ensembl peptide - ENSMUSP00000147939
Ensembl peptide - ENSMUSP00000147910
Ensembl peptide - ENSMUSP00000147671
Ensembl peptide - ENSMUSP00000147599
Ensembl peptide - ENSMUSP00000075655
NCBI entrez gene - 56194     See in Manteia.
MGI - MGI:1860512
RefSeq - XM_006498194
RefSeq - XM_006498195
RefSeq - XM_011239140
RefSeq - XM_017319135
RefSeq - XM_017319136
RefSeq - NM_018785
RefSeq - XM_006498192
RefSeq - XM_006498193
RefSeq Peptide - NP_061255
swissprot - Q9R1C7
swissprot - A0A1B0GT17
swissprot - A0A1B0GSH6
swissprot - A0A1B0GSF1
swissprot - A0A1B0GRU8
swissprot - A2AQW6
Ensembl - ENSMUSG00000061136
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 O75400ENSG00000196504Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Prpf40b / pre-mRNA processing factor 40B / Q6NWY9* / pre-mRNA processing factor 40 homolog B*ENSMUSG0000002300753
Q8CGF7 / Tcerg1 / transcription elongation regulator 1 (CA150) / O14776* / transcription elongation regulator 1*ENSMUSG0000002449818
Q3B807 / Tcerg1l / Transcription elongation regulator 1-like protein / Q5VWI1* / transcription elongation regulator 1 like*ENSMUSG000000910029


Protein motifs (from Interpro)
Interpro ID Name
 IPR001202  WW domain
 IPR002713  FF domain
 IPR036020  WW domain superfamily
 IPR036517  FF domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IBA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0007010 cytoskeleton organization ISO
 biological_processGO:0008360 regulation of cell shape ISO
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0016477 cell migration ISS
 biological_processGO:0032465 regulation of cytokinesis ISS
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005685 U1 snRNP IBA
 cellular_componentGO:0005829 cytosol ISO
 cellular_componentGO:0016363 nuclear matrix ISO
 cellular_componentGO:0016607 nuclear speck ISO
 cellular_componentGO:0071004 U2-type prespliceosome IBA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0070064 proline-rich region binding IDA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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