ENSG00000197121


Homo sapiens

Features
Gene ID: ENSG00000197121
  
Biological name :PGAP1
  
Synonyms : PGAP1 / post-GPI attachment to proteins 1 / Q75T13
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 2
Strand: -1
Band: q33.1
Gene start: 196833004
Gene end: 196927796
  
Corresponding Affymetrix probe sets: 213469_at (Human Genome U133 Plus 2.0 Array)   220576_at (Human Genome U133 Plus 2.0 Array)   239725_at (Human Genome U133 Plus 2.0 Array)   241801_at (Human Genome U133 Plus 2.0 Array)   244321_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000387028
Ensembl peptide - ENSP00000386802
Ensembl peptide - ENSP00000390555
Ensembl peptide - ENSP00000415405
Ensembl peptide - ENSP00000346809
Ensembl peptide - ENSP00000363870
NCBI entrez gene - 80055     See in Manteia.
OMIM - 611655
RefSeq - XM_017004994
RefSeq - NM_001321099
RefSeq - NM_001321100
RefSeq - NM_024989
RefSeq - XM_017004992
RefSeq - XM_017004993
RefSeq Peptide - NP_001308028
RefSeq Peptide - NP_079265
RefSeq Peptide - NP_001308029
swissprot - H7BZN8
swissprot - A6NI33
swissprot - Q75T13
swissprot - B4DYY6
swissprot - F8WD75
Ensembl - ENSG00000197121
  
Related genetic diseases (OMIM): 615802 - Mental retardation, autosomal recessive 42, 615802
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 pgap1ENSDARG00000062465Danio rerio
 ENSGALG00000030789Gallus gallus
 Pgap1ENSMUSG00000073678Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR012908  GPI inositol-deacylase PGAP1-like
 IPR029058  Alpha/Beta hydrolase fold


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006506 GPI anchor biosynthetic process IEA
 biological_processGO:0007605 sensory perception of sound IEA
 biological_processGO:0009880 embryonic pattern specification IEA
 biological_processGO:0009948 anterior/posterior axis specification IEA
 biological_processGO:0015031 protein transport IEA
 biological_processGO:0015798 myo-inositol transport ISS
 biological_processGO:0016255 attachment of GPI anchor to protein TAS
 biological_processGO:0021871 forebrain regionalization IEA
 biological_processGO:0060322 head development IEA
 biological_processGO:0090305 nucleic acid phosphodiester bond hydrolysis IEA
 cellular_componentGO:0005783 endoplasmic reticulum ISS
 cellular_componentGO:0005789 endoplasmic reticulum membrane TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0004518 nuclease activity ISS
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0016788 hydrolase activity, acting on ester bonds IEA
 molecular_functionGO:0042578 phosphoric ester hydrolase activity ISS


Pathways (from Reactome)
Pathway description
Attachment of GPI anchor to uPAR


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000154 Wide mouth "Abnormally wide mouth." [HPO:curators]
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 HP:0000164 Abnormality of the teeth "Any abnormality of the primary (deciduous) or permanent teeth." [HPO:curators]
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 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
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 HP:0000400 Large ears 
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 HP:0000470 Short neck 
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 HP:0000512 Abnormal electroretinogram "Any abnormality of the electrical responses of various cell types in the retina as measured by electroretinography." [HPO:curators]
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 HP:0000556 Retinal dystrophy 
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 HP:0001249 Mental retardation 
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 HP:0001250 Seizures "Seizures are an intermittent `abnormality of the central nervous system` (FMA:HP:0002011) due to a sudden, excessive, disorderly discharge of cerebral neurons and characterized clinically by some combination of disturbance of sensation, loss of consciousness, impairment of psychic function, or convulsive movements." [HPO:probinson]
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 HP:0001257 Spasticity "A motor disorder characterized by a velocity-dependent increase in tonic stretch reflexes with increased muscle tone, exaggerated (hyperexcitable) tendon reflexes." [HPO:curators]
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 HP:0001263 Developmental retardation "A delay in the achievement of motor or mental milestones manifested prior to age 18 and generally associated with lifelong mental and/or physical impairments." [HPO:curators]
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 HP:0001319 Neonatal hypotonia "Muscular hypotonia (abnormally low muscle tone) manifesting in the neonatal period." [HPO:curators]
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 HP:0001321 Cerebellar hypoplasia 
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 HP:0002059 Cerebral atrophy 
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 HP:0002079 Hypoplasia of the corpus callosum "Underdevelopment of the corpus callosum." [HPO:curators]
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 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
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 HP:0012448 Delayed myelination "`Delayed` (PATO:0000502) `myelination` (GO:0042552)." [ORCID:0000-0001-5208-3432]
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 HP:0100704 Cortical visual impairment "A form of loss of vision caused by damage to the visual cortex rather than a defect in the eye." [HPO:probinson]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSG00000011422 PLAUR / Q03405 / plasminogen activator, urokinase receptor  / reaction






 

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