ENSG00000197467


Homo sapiens

Features
Gene ID: ENSG00000197467
  
Biological name :COL13A1
  
Synonyms : COL13A1 / collagen type XIII alpha 1 chain / Q5TAT6
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 10
Strand: 1
Band: q22.1
Gene start: 69801867
Gene end: 69964275
  
Corresponding Affymetrix probe sets: 208535_x_at (Human Genome U133 Plus 2.0 Array)   211343_s_at (Human Genome U133 Plus 2.0 Array)   211809_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000430089
Ensembl peptide - ENSP00000430061
Ensembl peptide - ENSP00000430173
Ensembl peptide - ENSP00000496051
Ensembl peptide - ENSP00000346553
Ensembl peptide - ENSP00000350463
Ensembl peptide - ENSP00000381941
Ensembl peptide - ENSP00000381947
Ensembl peptide - ENSP00000381949
Ensembl peptide - ENSP00000388774
Ensembl peptide - ENSP00000428057
Ensembl peptide - ENSP00000428342
NCBI entrez gene - 1305     See in Manteia.
OMIM - 120350
RefSeq - XM_017015697
RefSeq - XM_017015685
RefSeq - XM_017015686
RefSeq - XM_017015687
RefSeq - XM_017015688
RefSeq - XM_017015689
RefSeq - XM_017015690
RefSeq - XM_017015691
RefSeq - XM_017015692
RefSeq - XM_017015693
RefSeq - XM_017015694
RefSeq - XM_017015695
RefSeq - XM_017015696
RefSeq - NM_001130103
RefSeq - NM_001320951
RefSeq - NM_080798
RefSeq - NM_080800
RefSeq - NM_080801
RefSeq - NM_080802
RefSeq - NM_080805
RefSeq - XM_011539292
RefSeq - XM_011539293
RefSeq - XM_011539294
RefSeq - XM_011539295
RefSeq - XM_017015676
RefSeq - XM_017015677
RefSeq - XM_017015678
RefSeq - XM_017015679
RefSeq - XM_017015680
RefSeq - XM_017015681
RefSeq - XM_017015682
RefSeq - XM_017015683
RefSeq - XM_017015684
RefSeq Peptide - NP_001307880
RefSeq Peptide - NP_542990
RefSeq Peptide - NP_542991
RefSeq Peptide - NP_542992
RefSeq Peptide - NP_542995
RefSeq Peptide - NP_001123575
RefSeq Peptide - NP_542988
swissprot - H7BYT9
swissprot - H7BZB6
swissprot - E7ES50
swissprot - E7EX21
swissprot - Q5TAT6
Ensembl - ENSG00000197467
  
Related genetic diseases (OMIM): 616720 - Myasthenic syndrome, congenital, 19, 616720
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 COL13A1ENSGALG00000004286Gallus gallus
 Q9R1N9ENSMUSG00000058806Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q9BXS0 / COL25A1 / collagen type XXV alpha 1 chainENSG0000018851739
Q86Y22 / COL23A1 / collagen type XXIII alpha 1 chainENSG0000005076737
COL9A1 / P20849 / collagen type IX alpha 1 chainENSG0000011228035
COL9A3 / Q14050 / collagen type IX alpha 3 chainENSG0000009275835
COL9A2 / Q14055 / collagen type IX alpha 2 chainENSG0000004908934


Protein motifs (from Interpro)
Interpro ID Name
 IPR008160  Collagen triple helix repeat
 IPR016133  Insect cysteine-rich antifreeze protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001503 ossification IEA
 biological_processGO:0001763 morphogenesis of a branching structure ISS
 biological_processGO:0001958 endochondral ossification ISS
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007160 cell-matrix adhesion IPI
 biological_processGO:0007275 multicellular organism development IEA
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0030198 extracellular matrix organization TAS
 biological_processGO:0030574 collagen catabolic process TAS
 biological_processGO:0098609 cell-cell adhesion IEP
 cellular_componentGO:0005576 extracellular region TAS
 cellular_componentGO:0005581 collagen trimer IEA
 cellular_componentGO:0005600 collagen type XIII trimer TAS
 cellular_componentGO:0005788 endoplasmic reticulum lumen TAS
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0005911 cell-cell junction IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0045202 synapse IEA
 cellular_componentGO:0045211 postsynaptic membrane IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0008201 heparin binding IEA


Pathways (from Reactome)
Pathway description
Collagen degradation
Collagen biosynthesis and modifying enzymes
Integrin cell surface interactions
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000007 Autosomal recessive inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in homozygotes. In the context of medical genetics, autosomal recessive disorders manifest in homozygotes (with two copies of the mutant allele) or compound heterozygotes (whereby each copy of a gene has a distinct mutant allele)." [HPO:curators]
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 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
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 HP:0000278 Retrognathia 
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 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
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 HP:0000369 Low-set ears "Low-set ears are defined to be set below an arbitrary line drawn between the lateral canthus of the eye and the occipital protruberance." [HPO:curators]
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 HP:0000508 Ptosis "Drooping of the eyelid." [HPO:curators]
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 HP:0000768 Pectus carinatum "A deformity of the chest caused by overgrowth of the ribs and characterized by protrusion of the sternum." [HPO:curators]
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 HP:0001270 Motor retardation 
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 HP:0001283 Bulbar palsy "Bulbar weakness (or bulbar palsy) refers to bilateral impairment of function of the lower cranial nerves IX, X, XI and XII, which occurs due to lower motor neuron lesion either at nuclear or fascicular level in the medulla or from bilateral lesions of the lower cranial nerves outside the brain-stem. Bulbar weakness is often associated with difficulty in chewing, weakness of the facial muscles, dysarthria, palatal weakness and regurgitation of fluids, dysphagia, and dysphonia." [HPO:curators]
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 HP:0001290 Generalized hypotonia "Generalized muscular hypotonia (abnormally low muscle tone)." [HPO:curators]
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 HP:0001761 Pes cavus 
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 HP:0002020 Gastroesophageal reflux 
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 HP:0002093 Respiratory insufficiency 
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 HP:0002421 Poor head control 
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 HP:0002783 Recurrent lower respiratory tract infections 
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 HP:0003306 Spinal rigidity 
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 HP:0003546 Exercise intolerance 
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 HP:0003577 Onset at birth 
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 HP:0010628 Facial muscle weakness "A weakness of any or all of the muscles of the face of any etiology." [HPO:curators]
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 HP:0011968 Feeding difficulties "Impaired ability to eat related to problems gathering food and getting ready to suck, chew, or swallow it." [ISCA:eriggs]
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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