ENSG00000050767


Homo sapiens

Features
Gene ID: ENSG00000050767
  
Biological name :COL23A1
  
Synonyms : COL23A1 / collagen type XXIII alpha 1 chain / Q86Y22
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 5
Strand: -1
Band: q35.3
Gene start: 178237618
Gene end: 178590555
  
Corresponding Affymetrix probe sets: 229168_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000496734
Ensembl peptide - ENSP00000375069
Ensembl peptide - ENSP00000385092
NCBI entrez gene - 91522     See in Manteia.
OMIM - 610043
RefSeq - XM_011534692
RefSeq - NM_173465
RefSeq - XM_011534689
RefSeq - XM_011534690
RefSeq - XM_011534691
RefSeq - XM_006714933
RefSeq - XM_006714934
RefSeq - XM_006714935
RefSeq - XM_006714936
RefSeq - XM_011534688
RefSeq Peptide - NP_775736
swissprot - Q86Y22
swissprot - A0A0A0MSD3
Ensembl - ENSG00000050767
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 si:ch211-160j14.3ENSDARG00000089078Danio rerio
 si:dkeyp-44a8.4ENSDARG00000095339Danio rerio
 COL23A1ENSGALG00000006708Gallus gallus
 Q8K4G2ENSMUSG00000063564Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q9BXS0 / COL25A1 / collagen type XXV alpha 1 chainENSG0000018851755
Q5TAT6 / COL13A1 / collagen type XIII alpha 1 chainENSG0000019746749
COL9A3 / Q14050 / collagen type IX alpha 3 chainENSG0000009275837
COL9A1 / P20849 / collagen type IX alpha 1 chainENSG0000011228037
COL9A2 / Q14055 / collagen type IX alpha 2 chainENSG0000004908934


Protein motifs (from Interpro)
Interpro ID Name
 IPR008160  Collagen triple helix repeat
 IPR016133  Insect cysteine-rich antifreeze protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005581 collagen trimer IEA
 cellular_componentGO:0005788 endoplasmic reticulum lumen TAS
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
Collagen degradation
Collagen biosynthesis and modifying enzymes
Integrin cell surface interactions
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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