ENSMUSG00000063564


Mus musculus

Features
Gene ID: ENSMUSG00000063564
  
Biological name :Col23a1
  
Synonyms : Col23a1 / Collagen alpha-1(XXIII) chain / Q8K4G2
  
Possible biological names infered from orthology : collagen type XXIII alpha 1 chain / Q86Y22
  
Species: Mus musculus
  
Chr. number: 11
Strand: 1
Band: B1.3
Gene start: 51289920
Gene end: 51583918
  
Corresponding Affymetrix probe sets: 10375838 (MoGene1.0st)   1429209_at (Mouse Genome 430 2.0 Array)   1429210_at (Mouse Genome 430 2.0 Array)   1440911_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000099826
Ensembl peptide - ENSMUSP00000119825
NCBI entrez gene - 237759     See in Manteia.
MGI - MGI:2653243
RefSeq - XM_017314520
RefSeq - NM_153393
RefSeq - XM_017314519
RefSeq Peptide - NP_700442
swissprot - Q8K4G2
swissprot - B1ATK5
Ensembl - ENSMUSG00000063564
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 si:ch211-160j14.3ENSDARG00000089078Danio rerio
 si:dkeyp-44a8.4ENSDARG00000095339Danio rerio
 COL23A1ENSGALG00000006708Gallus gallus
 Q86Y22ENSG00000050767Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q99MQ5 / Col25a1 / Collagen alpha-1(XXV) chain Collagen-like Alzheimer amyloid plaque component / Q9BXS0* / collagen type XXV alpha 1 chain*ENSMUSG0000005889755
Q9R1N9 / Col13a1 / Collagen alpha-1(XIII) chain / Q5TAT6* / collagen type XIII alpha 1 chain*ENSMUSG0000005880647
Col9a3 / collagen, type IX, alpha 3 / Q14050* / collagen type IX alpha 3 chain*ENSMUSG0000002757038
Col9a2 / collagen type IX alpha 2 chain / Q14055*ENSMUSG0000002862636
Col9a1 / collagen type IX alpha 1 chain / P20849*ENSMUSG0000002614736


Protein motifs (from Interpro)
Interpro ID Name
 IPR008160  Collagen triple helix repeat
 IPR016133  Insect cysteine-rich antifreeze protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005576 extracellular region TAS
 cellular_componentGO:0005581 collagen trimer IEA
 cellular_componentGO:0005886 plasma membrane TAS
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA


Pathways (from Reactome)
Pathway description
Collagen biosynthesis and modifying enzymes
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSMUSG00000030530 Furin / P23188 / P09958* / furin, paired basic amino acid cleaving enzyme*  / reaction
 ENSMUSG00000063564 Q8K4G2 / Col23a1 / Collagen alpha-1(XXIII) chain / Q86Y22* / collagen type XXIII alpha 1 chain*  / complex






 

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