ENSMUSG00000027570


Mus musculus

Features
Gene ID: ENSMUSG00000027570
  
Biological name :Col9a3
  
Synonyms : Col9a3 / collagen, type IX, alpha 3
  
Possible biological names infered from orthology : collagen type IX alpha 3 chain / Q14050
  
Species: Mus musculus
  
Chr. number: 2
Strand: 1
Band: H4
Gene start: 180597790
Gene end: 180622189
  
Corresponding Affymetrix probe sets: 10479423 (MoGene1.0st)   1420280_x_at (Mouse Genome 430 2.0 Array)   1460693_a_at (Mouse Genome 430 2.0 Array)   1460734_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000128718
Ensembl peptide - ENSMUSP00000099348
NCBI entrez gene - 12841     See in Manteia.
MGI - MGI:894686
RefSeq - NM_009936
RefSeq - XM_006500553
RefSeq Peptide - NP_034066
swissprot - A2ACT7
Ensembl - ENSMUSG00000027570
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 col9a3ENSDARG00000037845Danio rerio
 COL9A3ENSGALG00000005628Gallus gallus
 COL9A3ENSG00000092758Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Col9a2 / collagen type IX alpha 2 chain / Q14055*ENSMUSG0000002862649
Col9a1 / collagen type IX alpha 1 chain / P20849*ENSMUSG0000002614749
Q9R1N9 / Col13a1 / Collagen alpha-1(XIII) chain / Q5TAT6* / collagen type XIII alpha 1 chain*ENSMUSG0000005880636
Q99MQ5 / Col25a1 / Collagen alpha-1(XXV) chain Collagen-like Alzheimer amyloid plaque component / Q9BXS0* / collagen type XXV alpha 1 chain*ENSMUSG0000005889733
Q8K4G2 / Col23a1 / Collagen alpha-1(XXIII) chain / Q86Y22* / collagen type XXIII alpha 1 chain*ENSMUSG0000006356429


Protein motifs (from Interpro)
Interpro ID Name
 IPR008160  Collagen triple helix repeat
 IPR016133  Insect cysteine-rich antifreeze protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008584 male gonad development IEP
 biological_processGO:0008585 female gonad development IEP
 cellular_componentGO:0005581 collagen trimer IEA
 cellular_componentGO:0005594 collagen type IX trimer ISO


Pathways (from Reactome)
Pathway description
Collagen biosynthesis and modifying enzymes
Signaling by PDGF
Assembly of collagen fibrils and other multimeric structures
Integrin cell surface interactions
ECM proteoglycans
NCAM1 interactions
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSMUSG00000028626 Col9a2 / collagen type IX alpha 2 chain / Q14055*  / complex
 ENSMUSG00000026147 Col9a1 / collagen type IX alpha 1 chain / P20849*  / complex






 

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