ENSGALG00000005628


Gallus gallus

Features
Gene ID: ENSGALG00000005628
  
Biological name :COL9A3
  
Synonyms : COL9A3 / collagen alpha-3(IX) chain precursor
  
Possible biological names infered from orthology : collagen, type IX, alpha 3 / collagen type IX alpha 3 chain / Q14050
  
Species: Gallus gallus
  
Chr. number: 20
Strand: 1
Band:
Gene start: 8532484
Gene end: 8564351
  
Corresponding Affymetrix probe sets: Gga.10987.1.A1_at (Chicken Array)   Gga.10987.1.S1_at (Chicken Array)   Gga.3459.1.S1_at (Chicken Array)   Gga.3459.1.S2_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000009015
Ensembl peptide - ENSGALP00000058521
Ensembl peptide - ENSGALP00000057178
NCBI entrez gene - 396242     See in Manteia.
RefSeq - NM_205305
RefSeq Peptide - NP_990636
swissprot - A0A1D5PZV4
swissprot - A0A1D5PW49
swissprot - F1NGL0
Ensembl - ENSGALG00000005628
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 col9a3ENSDARG00000037845Danio rerio
 COL9A3ENSG00000092758Homo sapiens
 Col9a3ENSMUSG00000027570Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
COL9A1 / collagen type IX alpha 1 chain / P20849*ENSGALG0000001597050
COL9A2 / collagen type IX alpha 2 chain / Q14055*ENSGALG0000002752647
COL25A1 / collagen type XXV alpha 1 chain / Q99MQ5* / Q9BXS0* / Collagen alpha-1(XXV) chain Collagen-like Alzheimer amyloid plaque component*ENSGALG0000003941126
COL13A1 / collagen type XIII alpha 1 chain / Q5TAT6* / Q9R1N9* / Collagen alpha-1(XIII) chain *ENSGALG0000000428625
COL23A1 / collagen type XXIII alpha 1 chain / Q86Y22* / Q8K4G2* / Collagen alpha-1(XXIII) chain *ENSGALG0000000670822


Protein motifs (from Interpro)
Interpro ID Name
 IPR008160  Collagen triple helix repeat


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0008584 male gonad development IEA
 biological_processGO:0008585 female gonad development IEA
 cellular_componentGO:0005594 collagen type IX trimer IEA


Pathways (from Reactome)
Pathway description
Collagen biosynthesis and modifying enzymes
Signaling by PDGF
Assembly of collagen fibrils and other multimeric structures
Integrin cell surface interactions
NCAM1 interactions
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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