ENSGALG00000015970


Gallus gallus

Features
Gene ID: ENSGALG00000015970
  
Biological name :COL9A1
  
Synonyms : COL9A1 / collagen type IX alpha 1 chain
  
Possible biological names infered from orthology : P20849
  
Species: Gallus gallus
  
Chr. number: 3
Strand: 1
Band:
Gene start: 83104826
Gene end: 83171007
  
Corresponding Affymetrix probe sets: Gga.16397.1.A1_at (Chicken Array)   Gga.16397.1.S1_at (Chicken Array)   Gga.4990.1.S1_at (Chicken Array)   Gga.4990.2.S1_a_at (Chicken Array)   Gga.6545.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000045307
Ensembl peptide - ENSGALP00000036264
NCBI entrez gene - 771873     See in Manteia.
RefSeq - XM_015284748
RefSeq - NM_001100911
RefSeq Peptide - NP_001094381
swissprot - A0A1D5NY52
swissprot - F1NQ20
Ensembl - ENSGALG00000015970
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 col9a1aENSDARG00000073699Danio rerio
 col9a1bENSDARG00000031483Danio rerio
 COL9A1ENSG00000112280Homo sapiens
 Col9a1ENSMUSG00000026147Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
COL9A2 / collagen type IX alpha 2 chain / Q14055*ENSGALG0000002752639
COL9A3 / collagen alpha-3(IX) chain precursor / Q14050* / collagen, type IX, alpha 3* / collagen type IX alpha 3 chain*ENSGALG0000000562836
COL13A1 / collagen type XIII alpha 1 chain / Q5TAT6* / Q9R1N9* / Collagen alpha-1(XIII) chain *ENSGALG0000000428619
COL25A1 / collagen type XXV alpha 1 chain / Q99MQ5* / Q9BXS0* / Collagen alpha-1(XXV) chain Collagen-like Alzheimer amyloid plaque component*ENSGALG0000003941118
COL23A1 / collagen type XXIII alpha 1 chain / Q86Y22* / Q8K4G2* / Collagen alpha-1(XXIII) chain *ENSGALG0000000670816


Protein motifs (from Interpro)
Interpro ID Name
 IPR001791  Laminin G domain
 IPR008160  Collagen triple helix repeat
 IPR013320  Concanavalin A-like lectin/glucanase domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005594 collagen type IX trimer IEA


Pathways (from Reactome)
Pathway description
Collagen biosynthesis and modifying enzymes
Signaling by PDGF
Assembly of collagen fibrils and other multimeric structures
Integrin cell surface interactions
NCAM1 interactions
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000027526 COL9A2 / collagen type IX alpha 2 chain / Q14055*  / complex






 

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