ENSGALG00000027526


Gallus gallus

Features
Gene ID: ENSGALG00000027526
  
Biological name :COL9A2
  
Synonyms : COL9A2 / collagen type IX alpha 2 chain
  
Possible biological names infered from orthology : Q14055
  
Species: Gallus gallus
  
Chr. number: 23
Strand: -1
Band:
Gene start: 4887092
Gene end: 4897385
  
Corresponding Affymetrix probe sets: Gga.16241.1.S1_at (Chicken Array)   Gga.865.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000042507
NCBI entrez gene - 396524     See in Manteia.
RefSeq - XM_015297640
RefSeq - NM_001271988
RefSeq - XM_015297641
RefSeq Peptide - NP_001258917
swissprot - R4GK22
Ensembl - ENSGALG00000027526
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 col9a2ENSDARG00000024492Danio rerio
 COL9A2ENSG00000049089Homo sapiens
 Col9a2ENSMUSG00000028626Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
COL9A1 / collagen type IX alpha 1 chain / P20849*ENSGALG0000001597053
COL9A3 / collagen alpha-3(IX) chain precursor / Q14050* / collagen, type IX, alpha 3* / collagen type IX alpha 3 chain*ENSGALG0000000562846
COL13A1 / collagen type XIII alpha 1 chain / Q5TAT6* / Q9R1N9* / Collagen alpha-1(XIII) chain *ENSGALG0000000428625
COL25A1 / collagen type XXV alpha 1 chain / Q99MQ5* / Q9BXS0* / Collagen alpha-1(XXV) chain Collagen-like Alzheimer amyloid plaque component*ENSGALG0000003941124
COL23A1 / collagen type XXIII alpha 1 chain / Q86Y22* / Q8K4G2* / Collagen alpha-1(XXIII) chain *ENSGALG0000000670822


Protein motifs (from Interpro)
Interpro ID Name
 IPR008160  Collagen triple helix repeat


Gene Ontology (GO)
TypeGO IDTermEv.Code
 cellular_componentGO:0005594 collagen type IX trimer IEA


Pathways (from Reactome)
Pathway description
Collagen biosynthesis and modifying enzymes
Signaling by PDGF
Assembly of collagen fibrils and other multimeric structures
Integrin cell surface interactions
NCAM1 interactions
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSGALG00000015970 COL9A1 / collagen type IX alpha 1 chain / P20849*  / complex






 

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