ENSGALG00000039411


Gallus gallus

Features
Gene ID: ENSGALG00000039411
  
Biological name :COL25A1
  
Synonyms : COL25A1 / collagen type XXV alpha 1 chain
  
Possible biological names infered from orthology : Collagen alpha-1(XXV) chain Collagen-like Alzheimer amyloid plaque component / Q99MQ5 / Q9BXS0
  
Species: Gallus gallus
  
Chr. number: 4
Strand: 1
Band:
Gene start: 37840437
Gene end: 37922607
  
Corresponding Affymetrix probe sets: GgaAffx.6655.1.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000055337
swissprot - A0A1D5PR16
Ensembl - ENSGALG00000039411
  
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q9BXS0ENSG00000188517Homo sapiens
 Q99MQ5ENSMUSG00000058897Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
COL23A1 / collagen type XXIII alpha 1 chain / Q86Y22* / Q8K4G2* / Collagen alpha-1(XXIII) chain *ENSGALG0000000670841
COL13A1 / collagen type XIII alpha 1 chain / Q5TAT6* / Q9R1N9* / Collagen alpha-1(XIII) chain *ENSGALG0000000428637
COL9A3 / collagen alpha-3(IX) chain precursor / Q14050* / collagen, type IX, alpha 3* / collagen type IX alpha 3 chain*ENSGALG0000000562837
COL9A1 / collagen type IX alpha 1 chain / P20849*ENSGALG0000001597035
COL9A2 / collagen type IX alpha 2 chain / Q14055*ENSGALG0000002752634


Protein motifs (from Interpro)
Interpro ID Name
 IPR008160  Collagen triple helix repeat


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0060385 axonogenesis involved in innervation IEA
 cellular_componentGO:0005576 extracellular region IEA
 cellular_componentGO:0005615 extracellular space IEA
 cellular_componentGO:0005887 integral component of plasma membrane IEA
 molecular_functionGO:0001540 amyloid-beta binding IEA
 molecular_functionGO:0008201 heparin binding IEA


Pathways (from Reactome)
Pathway description
Collagen degradation
Collagen biosynthesis and modifying enzymes
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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