ENSDARG00000024492


Danio rerio

Features
Gene ID: ENSDARG00000024492
  
Biological name :col9a2
  
Synonyms : col9a2 / procollagen, type IX, alpha 2
  
Possible biological names infered from orthology : collagen type IX alpha 2 chain / Q14055
  
Species: Danio rerio
  
Chr. number: 19
Strand: 1
Band:
Gene start: 38422059
Gene end: 38467554
  
Corresponding Affymetrix probe sets: Dr.441.1.S1_at (Zebrafish Array)   NM_212579_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000037624
NCBI entrez gene - 321212     See in Manteia.
RefSeq - NM_212579
RefSeq Peptide - NP_997744
swissprot - Q1LXU2
ZFIN ID - ZDB-GENE-030131-9786
Ensembl - ENSDARG00000024492
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 COL9A2ENSGALG00000027526Gallus gallus
 COL9A2ENSG00000049089Homo sapiens
 Col9a2ENSMUSG00000028626Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
col9a1b / collagen, type IX, alpha 1b / COL9A1* / P20849* / collagen type IX alpha 1 chain*ENSDARG0000003148349
col9a1a / collagen, type IX, alpha 1a / COL9A1* / P20849* / collagen type IX alpha 1 chain*ENSDARG0000007369948
col9a3 / collagen, type IX, alpha 3 / Q14050* / collagen type IX alpha 3 chain*ENSDARG0000003784544
zgc:113232ENSDARG0000004011830
si:dkeyp-44a8.4 / Q86Y22* / Q8K4G2* / COL23A1* / Collagen alpha-1(XXIII) chain * / collagen type XXIII alpha 1 chain*ENSDARG0000009533924
si:ch211-160j14.3 / Q86Y22* / Q8K4G2* / COL23A1* / Collagen alpha-1(XXIII) chain * / collagen type XXIII alpha 1 chain*ENSDARG0000008907821


Protein motifs (from Interpro)
Interpro ID Name
 IPR008160  Collagen triple helix repeat


Gene Ontology (GO)
TypeGO IDTermEv.Code
No match


Pathways (from Reactome)
Pathway description
Collagen biosynthesis and modifying enzymes
Signaling by PDGF
Assembly of collagen fibrils and other multimeric structures
Integrin cell surface interactions
ECM proteoglycans
NCAM1 interactions
Collagen chain trimerization


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
 ENSDARG00000031483 col9a1b / collagen, type IX, alpha 1b / COL9A1* / P20849* / collagen type IX alpha 1 chain*  / complex
 ENSDARG00000037845 col9a3 / collagen, type IX, alpha 3 / Q14050* / collagen type IX alpha 3 chain*  / complex






 

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